Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1103 ATGGCGCTATGGATGGAAAACGGTTCAGAGCCACTAACAGAAGCCGAGAAGGCAGACCTTGAAGCCATTGCTGCCATCAAAGAATCCGCAGCCATTGAACTCAAGGAAAAGGGTAACGAGTATGTGAAGAAGGGTAAGAAGCATTACTCTGAAGCAATTGATTGCTACACAAGGGCGATTAATCAGAAAGCATTGAGTGATTCTGAGAGCTCTGTTCTTTTTGCGAACAGAGCGCATGTCAATTTGCTTCTTGGGAACCATAGGCGTGCCCTCACTGATGCTCAACAAGCACTCAACTTGTCCCCTTCCAACATAAAGGCAATTTATAGGGCTGTCAAAGCATCTCTATCACTGAATTTATTGGCTGAAGCACAAGACTTCTGCCGAAAGGGTCTTGAGTTGGACCCCAATAATGAGGAATTTAAGAGGCTTGACCAACAGATTCGTACGAAGATATCGGAGAAGGAGAAGCGTGAGGCTGAAGTCTCCAAAGCCATATTGGAGGCAAAAGAACTTGTGTCTGCAATAGAAAATAGAGGCTTGAAGATTGGAAAGGCAATATATCGAGAACTCACCGGGTTAAAGAAACCGGTGTTAGACAAAAATAATATCCTTCATTGGCCTGTCCTTCTTCTTTATGCAGAGGTTATGTCCAGTGATTTCATTGAGGATTTCTGTGAGACTGACATGCTTTCAGTCCACCTTGATATGATGTTTTCAGCAGACCAACCACTCCCATGGGATGTTGAAAACAATTACAAACGTGATTTTGTTGAATTATACTATGAGGCTGGCTCTGGAGTTCGTCTATCAAAGGAGAAACTTCTTCATTGTTTATTAGAGGGAACTGCAGCTTCTCATGTTGGTGATGAAGAGAAAGATGCAGTTGAGGATTTTAAACACAGTGCAGGTTCCCCAAAATGGATCAAAGTAAATGAGAAGAAAATGCTCCAAGATATCCTCAAAGAACCTAATTTCGTAATCCCAGAAATCCCAGTCTTCTATGTTGTTTCCAAGCAATCCAGCTTTTATAGCAAGTTCAAATCTGGAAAATGGGCTCCTCCAAGCATATGA 1074 0.4227 MALWMENGSEPLTEAEKADLEAIAAIKESAAIELKEKGNEYVKKGKKHYSEAIDCYTRAINQKALSDSESSVLFANRAHVNLLLGNHRRALTDAQQALNLSPSNIKAIYRAVKASLSLNLLAEAQDFCRKGLELDPNNEEFKRLDQQIRTKISEKEKREAEVSKAILEAKELVSAIENRGLKIGKAIYRELTGLKKPVLDKNNILHWPVLLLYAEVMSSDFIEDFCETDMLSVHLDMMFSADQPLPWDVENNYKRDFVELYYEAGSGVRLSKEKLLHCLLEGTAASHVGDEEKDAVEDFKHSAGSPKWIKVNEKKMLQDILKEPNFVIPEIPVFYVVSKQSSFYSKFKSGKWAPPSI* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1103 357 SUPERFAMILY TPR-like 22 162 IPR011990 GO:0005515
Amo02g1103 357 SMART tpr_5 71 104 IPR019734 GO:0005515
Amo02g1103 357 SMART tpr_5 31 66 IPR019734 GO:0005515
Amo02g1103 357 SMART tpr_5 105 138 IPR019734 GO:0005515
Amo02g1103 357 Gene3D Tetratricopeptide repeat domain 27 173 IPR011990 GO:0005515
Amo02g1103 357 Pfam Cns1/TTC4 Wheel domain 200 267 IPR044059 GO:0051879
Amo02g1103 357 ProSiteProfiles TPR repeat profile. 71 104 IPR019734 GO:0005515
Amo02g1103 357 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 353 - -
Amo02g1103 357 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 353 - -
Amo02g1103 357 Pfam Tetratricopeptide repeat 106 138 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1103 Amo-Chr2 18920038 18924520 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1103 30 160 Calmodulin-binding Proteins AT3G25230 33.099 1.61e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1103 K24927 - gmx:100783179 563.533