Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1102 ATGTTTCATTGTTTCTCACTCTTCATGGATGTTGTTGCAAACACAAATGCTCATAATGCTCGAGAGAGCATGATGAATCAGATGATGTATTCCGATATAAATTCTCGAATTGGGAGTTGTATGCCATTATCTTCTATGCGAATCGGAACTATCATTCACAATATTGAATTGAACCCAGGGCAAGGTGGCAAGCTGGTTAGAGCTGCTGGAACTTGTGCAAAAATCCTGAAAGAACCTACATCAAAATACTGTCTTATCCAGCTCCCCTCGGGTGTTAAAAAAATGATTGATTCTCGTTGCAGAGCCACCGTTGGTACTGTCTCAAATCCAAGCCATGGAGATAAGAAGCTTAGGAAGGCTGGACAAAGCCGGTGGCTTGGCCGGAGACCAGTTGTTCGAGGAGTGGCCATGAATCCAGTGGACCATCCTCATGGTGGAGGAGAGGGCAAGAGCAAGAGTAGTGGTCGGTGGGGAAAAGGATCTCGAACTCCTTGGGGTAAGCCGACTAAGAGTGGATTCAAGACCGGGCCCCTGAAACGGAGGAAGTAG 549 0.4663 MFHCFSLFMDVVANTNAHNARESMMNQMMYSDINSRIGSCMPLSSMRIGTIIHNIELNPGQGGKLVRAAGTCAKILKEPTSKYCLIQLPSGVKKMIDSRCRATVGTVSNPSHGDKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGRWGKGSRTPWGKPTKSGFKTGPLKRRK* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1102 182 Pfam Ribosomal Proteins L2, C-terminal domain 37 166 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo02g1102 182 PANTHER RIBOSOMAL PROTEIN L2 25 182 IPR002171 GO:0003735|GO:0005840|GO:0006412
Amo02g1102 182 ProSitePatterns Ribosomal protein L2 signature. 130 141 IPR022671 GO:0003735|GO:0005840|GO:0006412
Amo02g1102 182 Gene3D - 26 107 IPR014722 -
Amo02g1102 182 TIGRFAM rplB_bact: ribosomal protein uL2 31 178 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Amo02g1102 182 SMART Ribosomal_L2_C_2 35 168 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo02g1102 182 SUPERFAMILY Translation proteins SH3-like domain 37 171 IPR008991 -
Amo02g1102 182 Gene3D Ribosomal protein L2, domain 3 108 182 IPR014726 -
Amo02g1102 182 MobiDBLite consensus disorder prediction 136 182 - -
Amo02g1102 182 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 25 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1102 Amo-Chr2 18916215 18920031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1102 20 147 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 43.066 4.24e-25 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1102 - - lang:109347761 301.597