Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1069 ATGCAGGGTGTTACTATTATTCCTACTGGCGGTAGTGGTGGTGGTTCTACCATGTCTTCTACTTTGTCAAAGGAAGACACAAACTTGGTTCTTTCTTCTGAGGACTCTTCTTGCCCTGAAGATTCTGAGTTGCTTGAACTTGGTCTTGGATTAGGCCTTTCTCATCATCATAAACCTGCTCGTAAATCACACAGTCACCATCATCATCATGCTAGAATTTTGACCGCTAAGGATTTTCCTTCTTCAGCTTCAGCTTCTTCCTCATCTTCATCTTCACCTCCTTCTTCTTCTTTGAGCAGGGTAAACAACAACACTACCACCTCCACTTCTGGCACCAAGAGAACTGCTGAGTCTGTTGCTGCTGCTAATAATGGACCTAGTCCGGTAGTTGGATGGCCTCCCCTCAGAAGACCATACAGAGTGAATAGCTTTAATCATTCAAAATCTCCAGCCACCGAGGTGTTCAACTCAAATTCCGAGAAGAGTAAGAGCAGCGAAACTGATGTGCTAAGGAAGAATGCTGATAATACCAATGGTAATAACAACAACATTGATACCAAAGAAAAAAGAAACTTCCGGAGTTCCTTGTTTGTCAAGGTAAATATGGACGGGATAGCGATTGGAAGGAAGGTCGATTTGAGTGTCCATAGTTCTTATGAAACCTTAGCTCAAACATTGGAGGATATGTTTAGAGAATCAACTACAGCAATCACTTTCAATGGATCAAACGGAGAAGACTTCGGTATTCTTGTTGGAGGAGATCAACACTCAAAATTGCTGGATGGTTCTTCGAAGTTTGTGCTAACTTATGAAGACAAGGATGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGGGATGTTCCTTAGCTCAGTGAGGAGGCTTAGAATCATGAGAACATCTGAGGCCAATGGAAATGGACTTGCACCAATGTTGGAAGAAAAGAACTGCAGACAGAAAAGCAAGCCCATATAG 975 0.4267 MQGVTIIPTGGSGGGSTMSSTLSKEDTNLVLSSEDSSCPEDSELLELGLGLGLSHHHKPARKSHSHHHHHARILTAKDFPSSASASSSSSSSPPSSSLSRVNNNTTTSTSGTKRTAESVAAANNGPSPVVGWPPLRRPYRVNSFNHSKSPATEVFNSNSEKSKSSETDVLRKNADNTNGNNNNIDTKEKRNFRSSLFVKVNMDGIAIGRKVDLSVHSSYETLAQTLEDMFRESTTAITFNGSNGEDFGILVGGDQHSKLLDGSSKFVLTYEDKDGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGNGLAPMLEEKNCRQKSKPI* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1069 324 Gene3D - 190 310 - -
Amo02g1069 324 MobiDBLite consensus disorder prediction 171 185 - -
Amo02g1069 324 MobiDBLite consensus disorder prediction 1 41 - -
Amo02g1069 324 MobiDBLite consensus disorder prediction 142 163 - -
Amo02g1069 324 Pfam AUX/IAA family 46 305 IPR033389 -
Amo02g1069 324 ProSiteProfiles PB1 domain profile. 195 302 IPR000270 GO:0005515
Amo02g1069 324 SUPERFAMILY CAD & PB1 domains 189 298 - -
Amo02g1069 324 MobiDBLite consensus disorder prediction 1 38 - -
Amo02g1069 324 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 22 310 IPR003311 GO:0005634|GO:0006355
Amo02g1069 324 MobiDBLite consensus disorder prediction 79 187 - -
Amo02g1069 324 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 22 310 - -
Amo02g1069 324 MobiDBLite consensus disorder prediction 79 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1069 Amo-Chr2 17166808 17171205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1069 158 303 B3 DNA Binding Superfamily AT1G59750 28.082 3.47e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo02g1069 AUX_IAA 2.2e-58 CL0072