Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1055 ATGGCACCACCCAATGCAAATGTGAAAGCGGCCTATCGTGCGATGGCAGGTCTTGGGATTTCTGAATCACAAGTGAAACCAGTACTAAAGAAGCTCCTTAAATTGTATGATAAAAATTGGGCACTTATTGAAGAAGAGAATTATAGAGCTCTGGCAGATGCCATATTTGAGCCTGATGACGAAAATCAGGTCCTAAACCAGAAAAGGGTTCCAGAACAGAAAAAGAAAAAGAAGAAAGTTAACGAAGAAGAGATGGAGAACGAAGAAGAAGCTGAGATGAATTTGGAGTCAGCCCGCCCTTTGAAGAGAGTGCGTCTAAGAGGCCAAGAGAGTCAGTCTTTGCATCCTACAGCTAGCTGTTCCCCCACACTTGCCACCTCCCCATCAAAACAATCTGACACATCTGGTGGAAATTTGAGAACTGAAGTGCACCCAGCTCCAACACAAGATGTTATTGTTGGCAAGGGAAAACAACCCGTGTCACCCGATCTTAATCCCAGAAGAAGGAGATTGATATCTGAATCCGAAAGAGCATCCCAATCAGTCCCTTCTAAAGATCCAACAGCCAAACCAGAGCTATCAAGTGTTGGGGGCTCATCAATGAACAAAAATGCAGCTGGAAAGCAAAATGGTCATGTCAATATGGCATCATCACAATGCACAGCTGGAGACTCAAATGAAAGAGCTACATCTAGTATAGAGATAGCCTCGTCTACTAAGGGAGAGGTAAAAATTTCTCTGAGCTGCAGCTCAGCTGTTGGGGGACCAGATTTTCATATGCCTAGTCAAGATCAAATTCTAAAAATGATGGAGGATAAATGTCTGCATTCATATAAAATCACTGACCCGAATTTTTCTGTTCCGAAACTGTTGAAAGATATATGTGACTGTGTCCTGGAATTCAAAATCTATTCAGATGGTTCCCAGGAAGGAGCTCTCATAAGATCAAGGGACGATATGTTAAAGGAATCTGAGACACATGGCACACTGAGTGTCACAAGAAATAAGGATTTGGATGTGCTTTCTCTTCCACCAAGTGGAACAATTCATGTTGAGTCTTCTGCCACCTTGCCATCTCCCCGAAATCCCTTTTCTCTTGCCAACCACACTGGTCAGGTTGATGCTGTACTGGTTTCCAGGGATGCTATACATCATTTGTCAGAAAATGATGATGGAATGGAGTTGGAGGATCCTACTTCCTCAAATTCACGCAGTTTAGTGGTTGTTCCACAGCATGAACTTACAGCTGATGATATACGGTCGATTCACGATGTTAATGACCTCACAAAAGCAGAGGAAAGTGTTCAAATTTCATGGGTCAATGAAGTTACTAAGGATTTCCTGCCTCCTTTTCACTACATACCCCAAAACCTTGTGTTCCAAAATGCTTCTGTGAACATTTTGCTATCTCGTATTGGGGATGAGGACTGTTGCTCATCTTGTGTGGGAAATTGTGTCTCATCACCTACACCCTGTGCTTGTGCAAACAAAAATGGAGGGGAATTTGCATATAATGCACGAGGCCTATTGAAGGAAGGCTTTTTGGAAGGGTGCATTGCCATCAGCCGTAACCCTAAACGATATTACGTCTTTTGCAAAGACTGCCCAATTGAAAGATCTAAGAATGATGATTGTTTAGAACCATGTAAAGGACACTTGAAGAGGAAATTTATTAAAGAATGTTGGAGCAAATGTGGCTGTGGGAAACAGTGTGGCAATCGGATTGTTCAGCGTGGAATAACTTGCAATCTGCAGGTATTTTTCACTCCGGAAGGAAAAGGATGGGGTCTTCGTACTTTAGAAGAGCTGCCAAAAGGTGCATTTGTGTGCGAATTTGTTGGAGAGATATTAACTATTAAAGAGTTGCATGAGAGGAACATGAAACATGCTGTAACTGGGGAATATACATACCCGGTTCTACTGGATGCAGATTGGGGTTCAAGATTTGTGAAGGATGAAGAAGCTCTAAGCTTGGATGCTGCTTCCTTTGGTAATGCTGCTAGGTTTATCAATCACAGGTGTTATGATTCTAACTTGGTTGAGATCCCTGTTGAAATTGAAGTCCCAGGGCATTACTACTATCATTTTGCCTTGTTCACTTGCAGAAAAGTAGCAGCAAAGGAAGAGCTCACTTGGGACTATGGCATTGACTTTGATGACCATGATAATCCTATCAAGCCGTTCCAGTGCAAATGTGGAAGTAAATTCTGTAGGAATATGAAGCGTTCAAATAGGTCTGTGAGGTCTTCACCATCAAATGCAAGATGTTCTCTTTGA 2277 0.4229 MAPPNANVKAAYRAMAGLGISESQVKPVLKKLLKLYDKNWALIEEENYRALADAIFEPDDENQVLNQKRVPEQKKKKKKVNEEEMENEEEAEMNLESARPLKRVRLRGQESQSLHPTASCSPTLATSPSKQSDTSGGNLRTEVHPAPTQDVIVGKGKQPVSPDLNPRRRRLISESERASQSVPSKDPTAKPELSSVGGSSMNKNAAGKQNGHVNMASSQCTAGDSNERATSSIEIASSTKGEVKISLSCSSAVGGPDFHMPSQDQILKMMEDKCLHSYKITDPNFSVPKLLKDICDCVLEFKIYSDGSQEGALIRSRDDMLKESETHGTLSVTRNKDLDVLSLPPSGTIHVESSATLPSPRNPFSLANHTGQVDAVLVSRDAIHHLSENDDGMELEDPTSSNSRSLVVVPQHELTADDIRSIHDVNDLTKAEESVQISWVNEVTKDFLPPFHYIPQNLVFQNASVNILLSRIGDEDCCSSCVGNCVSSPTPCACANKNGGEFAYNARGLLKEGFLEGCIAISRNPKRYYVFCKDCPIERSKNDDCLEPCKGHLKRKFIKECWSKCGCGKQCGNRIVQRGITCNLQVFFTPEGKGWGLRTLEELPKGAFVCEFVGEILTIKELHERNMKHAVTGEYTYPVLLDADWGSRFVKDEEALSLDAASFGNAARFINHRCYDSNLVEIPVEIEVPGHYYYHFALFTCRKVAAKEELTWDYGIDFDDHDNPIKPFQCKCGSKFCRNMKRSNRSVRSSPSNARCSL* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1055 758 Gene3D SET domain 411 723 IPR046341 -
Amo02g1055 758 MobiDBLite consensus disorder prediction 176 229 - -
Amo02g1055 758 Pfam Ubiquitin-binding WIYLD domain 8 61 IPR018848 GO:0018024
Amo02g1055 758 MobiDBLite consensus disorder prediction 110 142 - -
Amo02g1055 758 CDD SET_SETDB-like 449 715 - -
Amo02g1055 758 ProSiteProfiles SET domain profile. 582 715 IPR001214 GO:0005515
Amo02g1055 758 MobiDBLite consensus disorder prediction 66 84 - -
Amo02g1055 758 Coils Coil 74 98 - -
Amo02g1055 758 Gene3D - 1 61 IPR043017 -
Amo02g1055 758 MobiDBLite consensus disorder prediction 66 229 - -
Amo02g1055 758 SMART preset_2 425 566 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo02g1055 758 Pfam Pre-SET motif 429 574 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo02g1055 758 MobiDBLite consensus disorder prediction 92 109 - -
Amo02g1055 758 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 4 748 - -
Amo02g1055 758 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 4 748 - -
Amo02g1055 758 ProSiteProfiles Pre-SET domain profile. 477 579 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo02g1055 758 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 754 IPR025776 -
Amo02g1055 758 SMART set_7 582 721 IPR001214 GO:0005515
Amo02g1055 758 Pfam SET domain 594 715 IPR001214 GO:0005515
Amo02g1055 758 SUPERFAMILY SET domain 435 738 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1055 Amo-Chr2 16828156 16836654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1055 427 738 Su(var)3-9 homologs AT1G73100 29.787 1.98e-28 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo02g1055 Pre-SET 4.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1055 - - gmx:100787369 911.368