Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1053 ATGGCGTCGAAGAGAGGTCGCGGAGGAAATGCCGGCAACAAGTTCCGTATGTCGCTGGGTCTTCCGGTGGCGGCGACGGTGAACTGCGCCGACAACACCGGCGCTAAGAACCTTTACATAATATCAGTGAAAGGAATCAAGGGAAGGCTGAACAGGTTGCCGTCGGCGTGCGTCGGTGACATGGTTATGGCGACTGTGAAGAAGGGAAAACCTGATCTCAGGAAGAAGGTGTTGCCAGCTGTCATTGTTCGCCAGCGCAAACCGTTTCGCCGAAAGGATGGTGTCTACATGTACTTCGAAGATAATGCTGGTGTCATTGTGAATCCTAAGGGTGAAATGAAAGGTTCTGCTATCACTGGTCCAATTGGGAAGGAGTGTGCTGATTTGTGGCCTAGGATTGCAAGTGCAGCCAATGCAATTGTTTGA 426 0.5141 MASKRGRGGNAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPFRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1053 141 Pfam Ribosomal protein L14p/L23e 23 141 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo02g1053 141 SMART Ribosomal_L14_2 20 141 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo02g1053 141 SUPERFAMILY Ribosomal protein L14 12 141 IPR036853 GO:0003735|GO:0005840|GO:0006412
Amo02g1053 141 Hamap 50S ribosomal protein L14 [rplN]. 20 141 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo02g1053 141 ProSitePatterns Ribosomal protein L14 signature. 80 106 IPR019972 -
Amo02g1053 141 Gene3D Ribosomal protein L14 2 141 IPR036853 GO:0003735|GO:0005840|GO:0006412
Amo02g1053 141 PANTHER 60S RIBOSOMAL PROTEIN L23 3 141 - -
Amo02g1053 141 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 3 141 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1053 Amo-Chr2 16782209 16784620 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1053 3 141 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 97.122 7.91e-97 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1053 K02894 - aof:109849970 278.485