Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1043 ATGGAAGCCCGTCCTTCTATATCCATTGAAAGATCAAGTGCGGAGAAACACAATGTCATGGGGATGTCTGGAGCACTATCTTCATCCTTGGCAGTCCTTCCAACACCCCTAGAAGAGACATATAATAAGTTGCCTGATTCACCTCTTGCTTTTGTAGAAGAAGGGCTGATGAGTGGACCTTTAACTCATTCTGGTCATTTAAATAACAACGGAGCAGTTGGACATATCTTTTCATCTTCTCCTGGATATTCAACTGCTCTTCACCATTCATCCCTTTCACCTCATGAAAAGCATTCTAGAAATGCTCACATTATTTCACATTCATCAACTAATATGGCTACATTGCCACCATTTTCTTCAAATAGTGGACCACTACCTTCCAAACCATCAAGCCATTTTCCTAATGAAAACAGTGCCTCCTGGCATACTGATTCTGTGCCAAGCTTTCTGGATTTTCCCGCAAATACTTCCATCGATAGTGGTAGGGAGCCATTCCAGGTTTCAAAACCATCTTTGCAATTACCAGGGCATCCATCCGAAGGCCATCAACAACTTCCTGCTTCATCTGAAGAAAATTGCGCTGGTGCTGCCCCTTCTTCCTCAGCAAAATCTGCTCCTTCCAAGCCACGAATGCGTTGGACTCCAGAACTTCATGAGGCCTTCGTGGATGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCTACTCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGCTTAACTATATATCATGTCAAAAGCCACTTGCAGAAATACAGGACAGCTAGATATAGACCCGACTCGTCTGAAGGAGTCTCAGAGAAAAAAACAAGTTCCATTGAAGAGATGGCATCACTAGATTTGAGAACTGGCATTGATATCACTGAAGCTCTGCGACTGCAAATGGTGGTTCAGAAGCAGTTGCATGAACAACTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTATCTCCAGATGATGTTTGAGAAGCAATGTAAACCCGAGACTGAAATGTTTAAGGCATCATTATCTACTGCTGAAAATCCATCTGGATCCTCTTTGGATGCCATGCAAGATGTTCCAGCCAAAAGCGCATCAATGGTGGACAATTACAAGCCAGGACCTGATCAAGCTATCGGCAGCACCAAGGTTGTGGAAGGCTCAGTGGAAATAGGGGGGAAACATGATTCTCCCAAAACACAACTTTCTGAGAATCCTAAGCAGCATGCTAATGCTAACGACGATGCTGCTCAAGCCTCGAAGCGTCAAAGAAAAGATGAGTAA 1302 0.4378 MEARPSISIERSSAEKHNVMGMSGALSSSLAVLPTPLEETYNKLPDSPLAFVEEGLMSGPLTHSGHLNNNGAVGHIFSSSPGYSTALHHSSLSPHEKHSRNAHIISHSSTNMATLPPFSSNSGPLPSKPSSHFPNENSASWHTDSVPSFLDFPANTSIDSGREPFQVSKPSLQLPGHPSEGHQQLPASSEENCAGAAPSSSAKSAPSKPRMRWTPELHEAFVDAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDSSEGVSEKKTSSIEEMASLDLRTGIDITEALRLQMVVQKQLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKPETEMFKASLSTAENPSGSSLDAMQDVPAKSASMVDNYKPGPDQAIGSTKVVEGSVEIGGKHDSPKTQLSENPKQHANANDDAAQASKRQRKDE* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1043 433 MobiDBLite consensus disorder prediction 370 433 - -
Amo02g1043 433 Pfam Myb-like DNA-binding domain 210 261 IPR001005 -
Amo02g1043 433 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 208 262 IPR006447 GO:0003677
Amo02g1043 433 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Amo02g1043 433 Pfam MYB-CC type transfactor, LHEQLE motif 294 339 IPR025756 -
Amo02g1043 433 SUPERFAMILY Homeodomain-like 206 262 IPR009057 -
Amo02g1043 433 MobiDBLite consensus disorder prediction 152 211 - -
Amo02g1043 433 MobiDBLite consensus disorder prediction 409 423 - -
Amo02g1043 433 MobiDBLite consensus disorder prediction 152 167 - -
Amo02g1043 433 MobiDBLite consensus disorder prediction 111 140 - -
Amo02g1043 433 MobiDBLite consensus disorder prediction 182 207 - -
Amo02g1043 433 Gene3D - 207 266 - -
Amo02g1043 433 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL4-RELATED 25 430 - -
Amo02g1043 433 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 25 430 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1043 Amo-Chr2 16069762 16073122 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1043 34 337 G2-like Transcription Factor Family AT4G28610 47.246 1.74e-78 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo02g1043 Myb_DNA-binding 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1043 - - aip:107624999 798.505