Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1040 ATGGCATCGGTTGCTGATACCATGAAGATGAACAACAAAAGGAATAAAAATAATCTTTCAAAAATTACTTACTTGACAGAGAGCGAGTCTGAAAACCTTGAAGATGGTTATAAATGGCGCAAGTACGGCAAAAAATCACTCAAAAAGAGCCCTTTCCCAAGGAGCTACTATCGTTGCACTGCAATTGGTTGCAATGCAAAGAAGAGAGTGGAGCGGTACATGGATGATCCCACCCATGTACTAACCACCTATGTGGGTTTGCACGCTCACGATTTGCCACCAATCCTTCCTCCTCCATCAAGATCTTTCAACCTCTACAATAACTCCACCGTAAGCCCCAAACTTGGTAAAGGAAGCGATGAACAAAAACCTATACTTTCAGATGCAAGTGCAGGTGCAAGAGAAAGAATGTATGCTAACAACACTATTACTAGTGTTAATGTTAGAACTGACAGTGATAGTTGTGTCAATGACGTTGGCTCGATTGAGAATATTGGTACCGGACTGCTTGAGGATATTGTTAATTTGTTGAAACTTCGAGCATCGACGATGGCATCGGTTGCTGATACCATGAGGATGAACAACAAAAGGAATAAAAATAATCTTTCAAAAATTACTTACATGACAGAGAGCGAGTCTGAAAGCCTCGAAGATGGTTATAAATGGCGCAAGTACGGCAAAAAATCACTCAAAAAGAGCCCTTTCCCAAGCTACTATCGTTGCACTGCAATTGGTTGCAATGCAAAGAAGAGAGTGGATCGGTACATGGATGATCCCACCCATGTACTAATCACCTATGTAGGTTTGCATGCTCATGATTTGCCACCAATCCTTCCACCTCCATCAAGATCTTTCAACCTCTACAATAACTCCACCGTAAGCCCCAAACTTGGTAAAGGAAGCGGTGTACAAAAACCTATACTTTCAGATGCAAGTGCAGGTGCAAGGGAAAGAATGTATGCCAACAACACTATTACTAGTGTTAATGTTAGAACTGGCAATGATAGTTGTGTTAATGACGTTGGCCCGATTGAGGATATTGGTACCGGACTGCTTGAGGATATTAATTTGTCATCAATAGCACCTCATTATCAACATCATCAACCAACATTCTATAGTTGA 1122 0.4118 MASVADTMKMNNKRNKNNLSKITYLTESESENLEDGYKWRKYGKKSLKKSPFPRSYYRCTAIGCNAKKRVERYMDDPTHVLTTYVGLHAHDLPPILPPPSRSFNLYNNSTVSPKLGKGSDEQKPILSDASAGARERMYANNTITSVNVRTDSDSCVNDVGSIENIGTGLLEDIVNLLKLRASTMASVADTMRMNNKRNKNNLSKITYMTESESESLEDGYKWRKYGKKSLKKSPFPSYYRCTAIGCNAKKRVDRYMDDPTHVLITYVGLHAHDLPPILPPPSRSFNLYNNSTVSPKLGKGSGVQKPILSDASAGARERMYANNTITSVNVRTGNDSCVNDVGPIEDIGTGLLEDINLSSIAPHYQHHQPTFYS* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1040 373 ProSiteProfiles WRKY domain profile. 211 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo02g1040 373 SMART WRKY_cls 216 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo02g1040 373 SMART WRKY_cls 33 92 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo02g1040 373 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 197 296 IPR044810 GO:0003700
Amo02g1040 373 Pfam WRKY DNA -binding domain 217 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo02g1040 373 Pfam WRKY DNA -binding domain 34 90 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo02g1040 373 Gene3D WRKY domain 18 94 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo02g1040 373 Gene3D WRKY domain 201 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo02g1040 373 SUPERFAMILY WRKY DNA-binding domain 210 275 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo02g1040 373 SUPERFAMILY WRKY DNA-binding domain 28 93 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo02g1040 373 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 197 296 - -
Amo02g1040 373 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 12 141 - -
Amo02g1040 373 ProSiteProfiles WRKY domain profile. 28 93 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo02g1040 373 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 12 141 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1040 Amo-Chr2 16015088 16019884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1040 21 93 WRKY Transcription Factor Family AT1G13960 56.164 2.10e-22 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo02g1040 WRKY 4e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1040 - - adu:107473839 400.593