Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1009 ATGAGGTGCCTACAGTCTGGGGAGCCATTAGGAAGAGCAGTTGAAATGGTTCCGTCGTCAGAATCTGTTGCGACCAGTGACTGCTCAGCAAGTGGTCATTCTTGCCTTGGTGGACAAATTGGCAACAAGAAGCCTGACACTGGCAATATAGAGGAAGCTGAATCATCCTTACGCGAGAGTGGTGTCTTGAACTATGAGGAAGCTAGAGCTCTGTTAGGAAGATATGAATATCAGAAGGGAAATTTAGTAGCGGCTTTACATGTCTTTGAAGGAATAGATATAGTTTCTGTGACTCCCAAGATTAAAGATGCCCTTTCCAAAAGCCGAGAACGGCGTAAGAGATATTCCCAGAATAATGATGAACAGCAAATGTCTGTACATGCTGTTGCCTTATTGTTGGAAGCTGTCTTCCTAAAAGCAAAATCTTTGCAGGTTCTTGGAAGGTTTAAAGAAGCTGCCCAATCTTGCAAAGTTATTCTGGACATAGTGGAATCTTCATTACCTGAAGGATTGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACTTTGAGCAAGGCAGTTGAGCTACTTCCGGAATTATGGAAACTTGCTGATTGTCAACGAGAAGCTATTTTGTCTTACCGGCGAGCACTCCTTCATGAATGGAATCTTGATGCAGAGACGATAGCGAAGATTCAGAAAGAATTTGCTCTTTTTCTTCTATATAGTGGCGGGGAAGCAATGCCACCTGATCTTCGTTCCCAAATGGACGGATCGTTTGTGCCTAGAAACAACATTGAAGAGGCTATACTTCTTTTAATGATTTTGCTAAGAAAAGTCACTCTAAATAGAATTGAGTGGGATCCTTCAATTTTGGACCACCTTTCATTTGCTCTATCTGTTTCTGGAGATTTGATGATTTTAGCCAATCAATTGGAAGAATTGCTTCCTGGGACTATCCATAGAAAGGAGAGGTTCTATGCTTTAGCTCTTTGTTATTATGGAGCAGGGAAGAACGTGGAAGCGCTGGATCTTCTTAGAAAACTGCTGAGTAATAGAGAGGACCCAAGACATGTTCCAAGTTTGTTAATGGCTTCTAAGATTTGTTGCGAGAACTTCAGTGTTACAAAAGACCCTGGGGTAAGCTTTGCTCGGATGGCACTTGAGAACTTGGATGGAAGATGTAATCAGTTAGAAAATTTGGCCAATTTCTTACTTGGTGTTTCACTTTCTGCATACTCGAAATTGGCCATTTCTGATGCTGAGAGGGTTAAGAGACAATCTGAGGCACTTCATACCCTTGAAACTGCCTGCAAATTGAGCAGAATGGAAGACCCTGTTGTATTATACCATCTGAGTTTAGAATATGCTGAGCAACGGAAGTTGGATGCTGCACTTCATTATGCTAAGTGCATTGTAAAACTTGAAGTTGGCTCTAATGTTAAAGGTTGGTTACTGTTATCTAGGGTATTATCCGCACAAAAGCGGTTCTTAGATGCCGAATCTATTATCAATGCTGCTTTGGATCAGACTGGGAAATGGGATCAAGGTGATTTGTTACGAACAAAGGCGAAACTTCAGATCGCTCAGGGCCAGTTAAAGAGTGCCATTGAGACATACACTCAGCTTCTTGCTGTTCTTCAAGTTCATAGTAAAAGTTTTGGTTCTCGCAATAAGCTATTTAAGGACAAAAGAGATCAGATTAGGAATTTGGAAGTTGAAGTATGGCATGATCTTGCTTATGTATACATCAGTCTTTCACAGTGGCGTGACGCAGAGGCCTGCCTTTCAAAATCTCGGGCCATCAAACTATACTCTTCTACTAGATGTCATGCAATAGGTAAAATGTATGAAGCAAAAGGTCTTTACAAGGAGGCTCTAAAAGCATTCCGCGATGCCTTGGACATCGATCCTGACCATGTCCCCAGCTTGATCTCCACTGCCATGGTTCTTAGACATTGCAGTGATCAATCGAATCCTGCAGTCAGAAGCTTTTTGATGGACGCACTGCGGCACGACAGATTTTGTGCTTCTGCTTGGTATAATCTTGGCCTTCTCCACAAGGCTTACGGTACAGAATCAGCATTTGTTGAAGGTGCAGAATGTTTTCAGGCAGCACACTCTCTTGAAGAATCTGAACCAGTTGAACCTTTCAGATGA 2145 0.4214 MRCLQSGEPLGRAVEMVPSSESVATSDCSASGHSCLGGQIGNKKPDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKGNLVAALHVFEGIDIVSVTPKIKDALSKSRERRKRYSQNNDEQQMSVHAVALLLEAVFLKAKSLQVLGRFKEAAQSCKVILDIVESSLPEGLPDNFGAECKLQETLSKAVELLPELWKLADCQREAILSYRRALLHEWNLDAETIAKIQKEFALFLLYSGGEAMPPDLRSQMDGSFVPRNNIEEAILLLMILLRKVTLNRIEWDPSILDHLSFALSVSGDLMILANQLEELLPGTIHRKERFYALALCYYGAGKNVEALDLLRKLLSNREDPRHVPSLLMASKICCENFSVTKDPGVSFARMALENLDGRCNQLENLANFLLGVSLSAYSKLAISDAERVKRQSEALHTLETACKLSRMEDPVVLYHLSLEYAEQRKLDAALHYAKCIVKLEVGSNVKGWLLLSRVLSAQKRFLDAESIINAALDQTGKWDQGDLLRTKAKLQIAQGQLKSAIETYTQLLAVLQVHSKSFGSRNKLFKDKRDQIRNLEVEVWHDLAYVYISLSQWRDAEACLSKSRAIKLYSSTRCHAIGKMYEAKGLYKEALKAFRDALDIDPDHVPSLISTAMVLRHCSDQSNPAVRSFLMDALRHDRFCASAWYNLGLLHKAYGTESAFVEGAECFQAAHSLEESEPVEPFR* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1009 714 SUPERFAMILY TPR-like 513 686 IPR011990 GO:0005515
Amo02g1009 714 PANTHER PROTEIN NPG1 1 714 IPR043376 -
Amo02g1009 714 Gene3D Tetratricopeptide repeat domain 38 551 IPR011990 GO:0005515
Amo02g1009 714 Pfam Tetratricopeptide repeat 605 635 IPR013105 -
Amo02g1009 714 SMART tpr_5 476 509 IPR019734 GO:0005515
Amo02g1009 714 SMART tpr_5 133 166 IPR019734 GO:0005515
Amo02g1009 714 SMART tpr_5 512 545 IPR019734 GO:0005515
Amo02g1009 714 SMART tpr_5 568 601 IPR019734 GO:0005515
Amo02g1009 714 SMART tpr_5 602 635 IPR019734 GO:0005515
Amo02g1009 714 SMART tpr_5 318 351 IPR019734 GO:0005515
Amo02g1009 714 SMART tpr_5 672 708 IPR019734 GO:0005515
Amo02g1009 714 SMART tpr_5 441 474 IPR019734 GO:0005515
Amo02g1009 714 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 1 714 - -
Amo02g1009 714 Gene3D Tetratricopeptide repeat domain 552 711 IPR011990 GO:0005515
Amo02g1009 714 SUPERFAMILY TPR-like 319 540 IPR011990 GO:0005515
Amo02g1009 714 ProSiteProfiles TPR repeat profile. 602 635 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1009 Amo-Chr2 15568147 15575886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1009 1 714 Calmodulin-binding Proteins AT4G28600 57.931 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1009 K21843 - gmx:100800762 1107.82