Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0987 ATGTTTCCTTTCCGTCCTTTAAGTCATTCCTGCTTAGAAGATCTGAAACTACTACACACACAAATCACGGCATCGACTGGTAATGGAAGGGTCCAAGGAGGCCACATTGTGCGGTCCACCGGCCGGAAGGACCGACACAGCAAGGTCTGCACAGCCAAGGGCCCGAGGGACCGCCGTGTGCGACTCTCCGCACACACCGCCATCCAGTTCTACGACGTTCAGGACCGACTCGGCTACGACCGCCCAAGCAAGGCCGTCGACTGGCTCATCAAGAAAGCAAAGGCCGCCATCGACGAGCTCGCCGAGCTCCCCGCATGGAAACCAACTGCCACTACCACGACCGTCGCCGCCGCCGCCGCGGCCTCGAACTCAAATGTTGCTGTTCAGCAGCAGAAGCTCCGGGAGGAGGAGGAAAACCAACAGCTGAATCAAATCGTCCACCGCCAATCGACCACGGTGGACGACGCTATGGAAGCTTCTGGTAGCCGAAAGGCTACCGCACTGGTTGGTGGCAGTGGAAGAATCTCGGAATTTCAACCGCAACATTTGAACGACGATAACGGTAGTAGTGGCAAATACAACAGTGGCGGTTCTGGTTTCTTTCCGCCGACTTTGGACACTGATATAGCTGATACCATTAAGTCTTTCTTTCCGATGGTGGGGCCGGGGGAGCAAGTGCTCTTCGCCGGAACCACCGCACTAGCGTTCGACGGCGGTTCTTCCGGATGGTCTGAACAGCAGCACCACCAAGAGGAACAGGAGCATGGACGATTGCAGAGAATGGTGGCTTGGAATAATGCCGCTGCAGATGCTAGTAGCAGTGGCCATGCCAGTGGATTCATCTTCAACTCGTCGGCGACGGCGGCTGTGCCGTCTCCTGCGATGTTTGGCCATGGCCAGTTTTTTCCTCAGAGGGGACCCCTTCAGTCCAGTAACACCCCTTCGTTTCGTGCTTGGATAGATCCTTCTTCGATCGCCACGGCTGCCATGACTGTGGATCACCACCACTATCTTTCACCGGCCGCGATCCATCAAGCTTCTATTGGGTTTGCCGGCTCTTCATCCGGTAGCTTCTCTGGCTTCCGCATACCAGCACGAATTCAGGGTGCGGAGGAGCACGACGGCGTATCTGACAAGCCCGTTCGATGGTTGTCTTTGAAGATGTTTGACAGTGAACAGCAAGTAAAAGCTCAGCATTGGAATGGATTCTCAGCTGCGAGAGAGTTCAAGATGAGTTTGGACTTTGGATGCTTTGATTTCAATGGCTCACTCAACCCAGATGCAAGGTTAAGCATTTTCTCTATGACAAAACTGGGCAAACCCAAATAA 1329 0.544 MFPFRPLSHSCLEDLKLLHTQITASTGNGRVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPAWKPTATTTTVAAAAAASNSNVAVQQQKLREEEENQQLNQIVHRQSTTVDDAMEASGSRKATALVGGSGRISEFQPQHLNDDNGSSGKYNSGGSGFFPPTLDTDIADTIKSFFPMVGPGEQVLFAGTTALAFDGGSSGWSEQQHHQEEQEHGRLQRMVAWNNAAADASSSGHASGFIFNSSATAAVPSPAMFGHGQFFPQRGPLQSSNTPSFRAWIDPSSIATAAMTVDHHHYLSPAAIHQASIGFAGSSSGSFSGFRIPARIQGAEEHDGVSDKPVRWLSLKMFDSEQQVKAQHWNGFSAAREFKMSLDFGCFDFNGSLNPDARLSIFSMTKLGKPK* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0987 442 Coils Coil 119 145 - -
Amo02g0987 442 PANTHER TRANSCRIPTION FACTOR TCP4 226 380 - -
Amo02g0987 442 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 226 380 IPR005333 GO:0003700
Amo02g0987 442 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 222 IPR005333 GO:0003700
Amo02g0987 442 Pfam TCP family transcription factor 41 149 IPR017887 -
Amo02g0987 442 MobiDBLite consensus disorder prediction 177 199 - -
Amo02g0987 442 PANTHER TRANSCRIPTION FACTOR TCP4 30 222 - -
Amo02g0987 442 ProSiteProfiles TCP domain profile. 42 100 IPR017887 -
Amo02g0987 442 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0987 Amo-Chr2 15090221 15094023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0987 15 380 TCP Transcription Factor Family AT1G53230 42.105 7.75e-80 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Amo02g0987 TCP 7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0987 - - aip:107630075 334.724