Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0953 ATGCTTCATCCAGCCACCGCCGTCGAAGCCACCGCCTTGCTTGCCGGTCGTCTCCGGCGCTGTTCGAACTTCGAAGCCACCATCGTCGCCGCAACTGGTCTCGCCTCGTTCCTCCATCGTGCAACCACTGTCCCGCCACGTCGTCTCTGTTTCACCGCGTCAGCCCCACTGTCGTGCTCCTTGTCCCGCTCTGGTTCTGAGAATGGTGACACTATGAACTATGCAACTGTGGTTAGGGAAGTGAAAGCATATTTGAAGAAAGGTGTTGCAGCGAAGGAATTGCAGTCACATATTGCTGCATTTCCTGTATCTGCTCAGGAGAAGATGAATGCACTTCTTGAAGGATTATTTGATGTCGTCGAAAAGGCGTTTGGAAAAGAAGCTACCAAGAGAAAGAATCACCTTGCTGGTGTAGTTGCTGGAGATGACGAGGGATCGCAGCTGTTATTACTCAATGCTGCTGAGGAGTTCTGTTACAAGAAAGGTAGCAATGAGTTTAATGAGGTTGCACTTTTTCTAAATTTCCTCTATGATGTTGATTTGGTGGAAGAAGAGCACGTTGTGCATTCGTATTCAAAGGGACTGAAGGGTGATAAAAAGGACTCTCAAATATGGAAGAATGCTCAACCATTCATTGATTGTCTTCGGAATGCTGAATCAGAATCGGAGGAAGAATGA 678 0.4764 MLHPATAVEATALLAGRLRRCSNFEATIVAATGLASFLHRATTVPPRRLCFTASAPLSCSLSRSGSENGDTMNYATVVREVKAYLKKGVAAKELQSHIAAFPVSAQEKMNALLEGLFDVVEKAFGKEATKRKNHLAGVVAGDDEGSQLLLLNAAEEFCYKKGSNEFNEVALFLNFLYDVDLVEEEHVVHSYSKGLKGDKKDSQIWKNAQPFIDCLRNAESESEEE* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0953 225 CDD W2_eIF5 77 223 - -
Amo02g0953 225 ProSiteProfiles W2 domain profile. 67 225 IPR003307 GO:0005515
Amo02g0953 225 SMART 542_3 133 221 IPR003307 GO:0005515
Amo02g0953 225 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-LIKE 65 225 - -
Amo02g0953 225 Gene3D - 66 225 - -
Amo02g0953 225 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 65 225 IPR045196 GO:0003743|GO:0006413
Amo02g0953 225 Pfam eIF4-gamma/eIF5/eIF2-epsilon 147 225 IPR003307 GO:0005515
Amo02g0953 225 SUPERFAMILY ARM repeat 73 219 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0953 Amo-Chr2 14767187 14768156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0953 77 218 Eukaryotic Initiation Factors Gene Family AT1G77840 46.154 4.60e-35 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0953 K03262 - ahf:112778866 333.183