Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0945 ATGGCGGCGTACGCAGCTATGAAACCTACGAAAGCCGTTTGTTCTGATTTGGTTCGTGGTGCGAAGGACAAGCGCCTCAGGGTGAAGGGACCTGTGAGGATGCCAACTAAGGTTCTTCACATCACTACCAGGAAATCCCCCTGTGGTGAAGAGCAGTCTGATCAACGCAAAGTGATGTGTTTTGTGGTCTCCGTCTCGGAGAACACCGGCTATAGAAGTACCAACACCTGGGACAGATTCGAACTACGTGTTCATAAGAGGGTCATTGACCTCTACAGTTCCCCTGATGTTGTTAAGCAGATTACTTCAATCACAATCGAGCCTGGTGTTGAGGTTGAGGTCACAATTGCAGATGCTTGA 360 0.4917 MAAYAAMKPTKAVCSDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEEQSDQRKVMCFVVSVSENTGYRSTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0945 119 ProSitePatterns Ribosomal protein S10 signature. 21 36 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Amo02g0945 119 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 8 119 IPR001848 GO:0003735|GO:0005840|GO:0006412
Amo02g0945 119 Pfam Ribosomal protein S10p/S20e 12 55 IPR027486 -
Amo02g0945 119 Pfam Ribosomal protein S10p/S20e 74 115 IPR027486 -
Amo02g0945 119 PANTHER 40S RIBOSOMAL PROTEIN S20-1-RELATED 8 119 - -
Amo02g0945 119 Hamap 30S ribosomal protein S10 [rpsJ]. 2 116 IPR001848 GO:0003735|GO:0005840|GO:0006412
Amo02g0945 119 SUPERFAMILY Ribosomal protein S10 11 53 IPR036838 -
Amo02g0945 119 SMART Ribosomal_S10_2 7 115 IPR027486 -
Amo02g0945 119 Gene3D Ribosomal protein S10 domain 4 118 IPR036838 -
Amo02g0945 119 SUPERFAMILY Ribosomal protein S10 73 116 IPR036838 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0945 Amo-Chr2 14584153 14585369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0945 3 119 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 60.839 5.15e-51 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0945 K02969 - gmx:100817306 162.54