Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0931 ATGGAGGAAGAGCAGGATCGAATTCTGCTCAACAGTTTGGGCGTTAAGTCGGCGAATCCCGAAGACATTGAACGCCACGTCTTAGAAAAGGCGACTGCTGTTCCCGAAGCTGAAGGGAGTGTGAAGGAAGAAGATTCTAGTGTATCTGGAAATGTTGATCCATCATCTGCTACTAAAGCAGAGCTTAATCAGAAACTGAGGGCAGTGAGATTTGAAATAGATGCAGTAGCGTCTACCATTCAGCAATTGAGAAGTGATGAGAATGATGGAGAATGTGGTGGTGTTGGCGAGGACAGCCAGGAGAAAGGAGTTGCTGAAGGTGGTTCCTCCAATGATTCAAACCTTCAGTGTGTTCTTGCTGCTGATAGGCTACAGAGCCTGAAGAAAACAAAGGCTCAACTAGAGGAAAAGCTTTCGGAGTTCTRTAAGGATGATGTTTCCAAAAATAGTGACCAGGAAAAATTGATATTTGATTTAGTTAAGCAAGATAGAAGACCAAAGAAGAAATTAAAAAAAGAAGATAAAAGGCCACAGAAAAGCTYGGGGAAGCGGCAAAGGATAGTCTCCTTTAATGATGATGCTGATTTTGATGCTGTTTTGGATGCAGCCTCTGCAGGTTTTGTTGAAACAGAGAGRGATGAGTTGGTGAGAAAAGGGGTTCTAACCCCTTTTCATAAGTTGAAGGGCTTTGAGCGCCGATTTCAACAATCTGCAGCATCAAGTAGCCATAATGYATCTGAGCAAGAAAATACTGGTGATCTTGCTTCTGAAAGTGTTGAAAGGGCTGCTAGATCAATATCCGAGGCAGCAAGAGCTCGCCCAACCACCAAGCTGCTTGAATATGATGCCGTTCCAAAGCTTGATGCCCCCACCTTTCCATTTCAAAGGCTCAGGAAACCACTTAAATTACGAGACAAAGAGGAAGAGGAGAATAAAGATTCCAAGAGGAAAAGGAGGCGGCCTTTGCCTGGCAGGAAATGGACAAGGCGTGTTTCTTGTGAGGATATGCAACATGGAGATAGTGAAAATGCAAATGGTCACTTGGATACTTCTAGTTGTGAAAGTTTGGAAGCTCAAGATGTTGAACTTGCCGATCATGAATCTTCTTATATAACATTAGAAGGTGGACTAAAAATCCCTGATAACATCTTTGATGCACTGTTTGACTATCAGAAGGTTGGTGTTCAATGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGCCTTGGTAAAACTGTCCAGGTCTTATCTTTTCTTGGTGCATTGCATTTTAGTGGCATGTACAAGCCCAGCATTATTATCTGTCCTGTTACACTTTTGAGACAGTGGAAAAGGGAAGCTAAAAAGTGGTACCCGAAATTTCATGTAGAGCTTTTACATGATTCTGTTCAGGATTCTTCTCCTAGAAAGAAGCAAGCAAATTCTGATGAATCGGACTATGAGAGTGATRTTTCAAACGACAGTGATGATGAAAGAAGTGTACCATCTAGAAACACAAGAAAGTGGAAATCCCTGATAAATCGTGTTTTGAGATCAGAATCTGGTTTACTTATCACCACTTACGAGCAAATCAGAATATTGGGGGACCAGTTGCTTGACATTGAATGGGGTTATGCTGTTCTTGATGAAGGACATAGAATAAGAAATCCTAATGCTGAAGTCACCCTTGTTTGTAAACAGCTACAAACTGTGCACCGCATTATAATGACTGGTGCACCTATTCAGAACAAGCTGTCAGAACTCTGGTCATTGTTTGATTTTGTTTTTCCTGGAARATTGGGTGTGTTGCCTGTATTTGAAGCAGAATTTGCAGTTCCTATYGCCGTTGGTGGTTATGCAAATGCTTCACCATTACAAGTATCCACAGCATACAGGTGTGCTGTGGTGCTGCGTGATTTAATCATGCCTTATCTTCTTCGACGCATGAAGGCTGATGTGAATGCGCAGCTTCCAAATAAAACTGAGCATGTCCTATTCTGCAGCCTCACATCAGAGCAAATATCTGCTTATAGAGCATTTTTGGCAAGTTCGGAAGTGGAGCAAATATTGGATGGACACAAGAATTCTCTTTCTGGAATTGATGTGATGCGCAAGATATGCAATCACCCTGACCTACTTGAAAGAGATCATGCCTCAGGTAATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAGATTGTAGCTCAAGTGCTCAATGCTTGGAAGGARCAAGGTCACCGTGTTCTTCTTTTTACTCAAACCCAACAAATGCTCGACATTCTTGAGAATTTTTTATCTACTTCTGGTCATATGTATCGGAGAATGGATGGTCTYACTCCCGTAAAACAGAGAATGGCTTTAATAGACGAATTTAATGCCTCAAATGATATATTTATTTTTATTCTAACAACCAGAGTTGGGGGTTTGGGGACAAATCTTACTGGTGCAAACAGGGTGATAATCTTTGACCCTGATTGGAATCCTTCAAATGATATGCAGGCCAGAGAGCGTGCTTGGCGTATTGGTCAGAAACGGGATGTAACAGTGTATAGGTTGATCACACGAGGAACTATAGAGGAGAAAGTTTATCACCGTCAGATTTACAAACATTTTCTTACCAATAAAATACTCAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCCCGGGATATGAAAGATCTTTTCACATTGAATGTGGATGGAGAAACTGGGTCTACTGAAACATCAAATATTTTCGGCCAAATATCTGAAGAAGTAAATATGGTTGGGACACACACAAACAACCAGGAGAATAATAAATTTAGCAAGACTACTGAACCGGTTTCTGAAGATGTTGCAGCTGATAATGATGACCAATCACAGAGCGGATCTCCGAATGGAAAGGGCAAAGGGAAAGCGGAACATGGTGACGGGGTTGATGAGGAAACAAATATATTGAAGAGTCTTTTTGGTGCCAATGGGATACATAGTGCCTTGAACCATGATATGATCATGAATGCCAATGATGAGGAGAAACTGAGGCTTCAGGAGGAAGCATCCAAGGTTGCACAAAGAGCTGCAGAAGCTTTACGTCAATCACGAATGCTCCGAAGCCACGACAGCGTCTCTGTTCCTACATGGACAGGAAGGTCTGGAGCTGCTGGTGCACCAGCATCTGTTAAGCGGAAATTTGGTTCAACTGTGAATACCCAGTTGATAAAWAATAACAAAGCATCTGATGGATCACCCARCAATGGAACTAAAAAATTGAATGGATTTGCTGCTGGAGCGAYGTCCGGGAAGGCATTATCTTCTGCTGAACTTTTGGCAAGAATTCGAGTTAACCAAGATAATGCYRTTGGTGCTGGCCTCGAACATCAATTTGGTACAAGCTCAAGTTCAATTAATCAAGCAAGATCTACAGATGTCAGATCTTCTAGAGCTTCTGAAAATATRTCTGGCTCGCAACCTGAAGTATTAATTCGTCAGATATGTACATTTCTACAACAGCATGGCGGCAGTTCCAGTTCAGCCAGCATAGTTCAGTATTTCAAGGACAGAATACCCTCCAAAGATCTTGCTTTATTCAAGAATCTGTTAAAGGAAATAGCTACTCTGCATAAAGGGCCTAGTGGATCGAATTGGGTTCTGAAGCCAGACTACCAATAA 3654 0.4165 MEEEQDRILLNSLGVKSANPEDIERHVLEKATAVPEAEGSVKEEDSSVSGNVDPSSATKAELNQKLRAVRFEIDAVASTIQQLRSDENDGECGGVGEDSQEKGVAEGGSSNDSNLQCVLAADRLQSLKKTKAQLEEKLSEFXKDDVSKNSDQEKLIFDLVKQDRRPKKKLKKEDKRPQKSXGKRQRIVSFNDDADFDAVLDAASAGFVETERDELVRKGVLTPFHKLKGFERRFQQSAASSSHNXSEQENTGDLASESVERAARSISEAARARPTTKLLEYDAVPKLDAPTFPFQRLRKPLKLRDKEEEENKDSKRKRRRPLPGRKWTRRVSCEDMQHGDSENANGHLDTSSCESLEAQDVELADHESSYITLEGGLKIPDNIFDALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQVLSFLGALHFSGMYKPSIIICPVTLLRQWKREAKKWYPKFHVELLHDSVQDSSPRKKQANSDESDYESDXSNDSDDERSVPSRNTRKWKSLINRVLRSESGLLITTYEQIRILGDQLLDIEWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGXLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPNKTEHVLFCSLTSEQISAYRAFLASSEVEQILDGHKNSLSGIDVMRKICNHPDLLERDHASGNPDYGNPERSGKMKIVAQVLNAWKEQGHRVLLFTQTQQMLDILENFLSTSGHMYRRMDGLTPVKQRMALIDEFNASNDIFIFILTTRVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLNVDGETGSTETSNIFGQISEEVNMVGTHTNNQENNKFSKTTEPVSEDVAADNDDQSQSGSPNGKGKGKAEHGDGVDEETNILKSLFGANGIHSALNHDMIMNANDEEKLRLQEEASKVAQRAAEALRQSRMLRSHDSVSVPTWTGRSGAAGAPASVKRKFGSTVNTQLIXNNKASDGSPXNGTKKLNGFAAGAXSGKALSSAELLARIRVNQDNAXGAGLEHQFGTSSSSINQARSTDVRSSRASENXSGSQPEVLIRQICTFLQQHGGSSSSASIVQYFKDRIPSKDLALFKNLLKEIATLHKGPSGSNWVLKPDYQ* 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0931 1217 MobiDBLite consensus disorder prediction 298 317 - -
Amo02g0931 1217 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 399 598 IPR014001 -
Amo02g0931 1217 Coils Coil 143 144 - -
Amo02g0931 1217 MobiDBLite consensus disorder prediction 327 342 - -
Amo02g0931 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 650 907 IPR027417 -
Amo02g0931 1217 Coils Coil 117 141 - -
Amo02g0931 1217 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 246 1104 - -
Amo02g0931 1217 MobiDBLite consensus disorder prediction 1120 1150 - -
Amo02g0931 1217 MobiDBLite consensus disorder prediction 924 941 - -
Amo02g0931 1217 MobiDBLite consensus disorder prediction 82 112 - -
Amo02g0931 1217 MobiDBLite consensus disorder prediction 298 351 - -
Amo02g0931 1217 Gene3D - 356 647 IPR038718 -
Amo02g0931 1217 Pfam SNF2-related domain 390 712 IPR000330 GO:0005524|GO:0140658
Amo02g0931 1217 Gene3D - 654 947 IPR027417 -
Amo02g0931 1217 MobiDBLite consensus disorder prediction 235 268 - -
Amo02g0931 1217 MobiDBLite consensus disorder prediction 166 187 - -
Amo02g0931 1217 Pfam Helicase conserved C-terminal domain 732 844 IPR001650 -
Amo02g0931 1217 MobiDBLite consensus disorder prediction 924 977 - -
Amo02g0931 1217 CDD SF2_C_SNF 730 855 - -
Amo02g0931 1217 PANTHER SNF2/RAD54 FAMILY MEMBER 246 1104 - -
Amo02g0931 1217 SMART ultradead3 383 615 IPR014001 -
Amo02g0931 1217 Coils Coil 1007 1027 - -
Amo02g0931 1217 MobiDBLite consensus disorder prediction 472 502 - -
Amo02g0931 1217 CDD DEXHc_ERCC6 387 597 - -
Amo02g0931 1217 MobiDBLite consensus disorder prediction 1117 1150 - -
Amo02g0931 1217 MobiDBLite consensus disorder prediction 19 43 - -
Amo02g0931 1217 SMART helicmild6 761 844 IPR001650 -
Amo02g0931 1217 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 735 894 IPR001650 -
Amo02g0931 1217 MobiDBLite consensus disorder prediction 44 62 - -
Amo02g0931 1217 MobiDBLite consensus disorder prediction 235 255 - -
Amo02g0931 1217 MobiDBLite consensus disorder prediction 19 63 - -
Amo02g0931 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 648 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0931 Amo-Chr2 14316531 14322782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0931 380 897 RAD5 or RAD16-like Gene Family AT1G02670 22.987 2.58e-25 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo02g0931 SNF2_N 1.7e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0931 K10841 - gmx:100820025 1885.92