Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0916 ATGTGCAAGTCTCGCCTTGTATTTACTTCAGATAAGAAGCCTTTAGCGATGGTGTTAACACCTACCAGAGAGCTTTCTATACAGGTTGAAGAGCATGCAAAGTTGCTTGGAAAGGGGTTACCATTTAAAACTGCCCTTGTGGTTGGTGGTGAGGCCATGGCTAGACAACTCTATCGCTTTCAGCAAGGAGTTGAACTGATTGTGGGAACACCAGGAAGGCTTGTCGATCTTTTAACAAAGCATGAGATCGACTTAGATAATGTGATGACTTTTGTTTTGGATGAAGTTGATTGCATGCTTCAAAGGGGTTTCAGAGATCAGGTCATACAGATATACAGGGCTCTGTCACAACCTCAGGTCTTGATGTATTCTGCAACAATGTCTCATGATTTAGAGAAGATGGCAAACTCTCTTGCGAATGGTGTGTCAGTTATCTCTGCTGGGAAGGTGAATAGCCCAAATAAGGCTGTGAAGCAGGTCGCTATTTGGGTTGAGTCAAAGCAAAAGAAGCAGAAGCTGTTTGAGATATTAGTGAGTAGGCAACATTTTAAGCGAAAGCATAGATAA 567 0.425 MCKSRLVFTSDKKPLAMVLTPTRELSIQVEEHAKLLGKGLPFKTALVVGGEAMARQLYRFQQGVELIVGTPGRLVDLLTKHEIDLDNVMTFVLDEVDCMLQRGFRDQVIQIYRALSQPQVLMYSATMSHDLEKMANSLANGVSVISAGKVNSPNKAVKQVAIWVESKQKKQKLFEILVSRQHFKRKHR* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0916 188 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 9 184 - -
Amo02g0916 188 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 142 IPR027417 -
Amo02g0916 188 PANTHER ATP-DEPENDENT RNA HELICASE DDX59-RELATED 9 184 - -
Amo02g0916 188 SMART ultradead3 4 160 IPR014001 -
Amo02g0916 188 Pfam DEAD/DEAH box helicase 10 133 IPR011545 GO:0003676|GO:0005524
Amo02g0916 188 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 145 IPR014001 -
Amo02g0916 188 Gene3D - 3 160 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0916 Amo-Chr2 14205501 14206067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0916 16 170 Eukaryotic Initiation Factors Gene Family AT1G72730 37.179 1.57e-24 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0916 K19466 - gmx:100784491 298.516