Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0901 ATGGGTCTTAGAGATATTGGTGCTTCATTGCCACCTGGGTTTCGGTTCTATCCAAGTGATGAAGAATTAGTTCTTCACTATCTTTACAAGAAGATCACAAATGAGGAAGTTCTCAAGGGTACTTTGATGGAAATTGATTTGCACACATGTGAGCCATGGCAGCTTCCTGGTCATCTTTATCTGATGGGGATTGGAAACTTGAAAATTGCAAGGTCATTGATGAACAAGATGACATACATGAAAGTGATTTCACACACAAGACCTAATTATTACTGA 276 0.3877 MGLRDIGASLPPGFRFYPSDEELVLHYLYKKITNEEVLKGTLMEIDLHTCEPWQLPGHLYLMGIGNLKIARSLMNKMTYMKVISHTRPNYY* 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0901 91 SUPERFAMILY NAC domain 8 59 IPR036093 GO:0003677|GO:0006355
Amo02g0901 91 ProSiteProfiles NAC domain profile. 10 91 IPR003441 GO:0003677|GO:0006355
Amo02g0901 91 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 57 - -
Amo02g0901 91 Pfam No apical meristem (NAM) protein 11 58 IPR003441 GO:0003677|GO:0006355
Amo02g0901 91 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 57 - -
Amo02g0901 91 Gene3D NAC domain 19 82 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0901 Amo-Chr2 13684021 13687051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0901 1 56 NAC Transcription Factor Family AT4G28530 56.944 1.82e-20 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo02g0901 NAM 3.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0901 - - gmx:100783645 122.094