Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0892 ATGCCATCTCTCCCGTCCCCGGCGGGGAGAATCCACCGCCTGGAAATGGAGAATTTCAAGTCTTACAAGGGCCACCAAGTAATCGGCCCCTTCTTCGACTTCACCGCCATCATCGGTCCCAACGGCGCCGGAAAATCGAACCTCATGGACGCAATCAGCTTCGTCCTTGGCGTCCGCACCGGCCAACTTCGTGGTGCGCAGCTGAGGGACCTCATCTACGCCTCCGACGACAAGGAGAAGGAGCAGAAGGGACGCAGGGCATTCGTTCGGCTCGTCTACCAGCTCAACAACAATAACGGTAGTAACGGTTCGGACACCGAGATCACGTTCACTCGAGCCATCACCAGCGCCGGCGCCAGCGAGTACCGAATCGACGGTAACGTTGTCACTTGGGATGTTTACAATGCCAAGCTCAAGTCCCTTGGGATACTTGTCAAGGCTCGCAATTTTCTCGTCTTTCAGGGTGATGTAGAATCCATTGCATCAAAAAACCCAAAGGAACTTACTGCCCTTCTCGAGCAAATATCTGGCTCTGATGAGCTCAAGAGGGACTACGAGCAATTTGAAGAAGAAAAGGGTGAAGCTGAAGAAAAATCAGCACTTGTCTATCAAAAGAAAAAGACAGTGGTGATGGAGAGAAAACAGAAGAAAGAACAAAAAGAAGAGGCAGAGAAACATCTCCGACTGCAAGAACAACTGAAATCTATAAAGAAAGAACATTTCCTGTGGCAGTTGTTCAATATAGAAAAGGATGTTGCTAAAACAAACGAGGAGCTTGATGATGATGAAAAACGCCGTAAAGAAGTTATGGAAGAACTAGAAAATTTTGAACGTGAGGCTAGTAAAAAGAAAAAGGAGCAAGCCAAATATCTGAAAGAGATTGCATTGCGTGAAAAAAAAATTACGGAGAAAAGTAGCAGACTTGACAAGAGTCAACCTGAGCTCCTCAAGCTGCGGGAGGAAATTAATCGTATAAATTCAAAAATTAAGAAAAGCAATAAGGAGCTTGAAAAGAAAAGAGCAGAACGGAGGAGACATGCTGATGATATAGAAGAGCTACAGAAGGGGATACAGGATCTTACAGCAAAAATGGCAGCCCTACAAGAAAGGGGTCGAGATGTTCGTGATAAACTACAGTTAGATGGTGATGACTTGGAAGAATATTTTCAAATCAAGGAAAAAGCTGGAATGAAAACTGCAAAGCTAAGAGAGGAGAAAGAGCTTCTAGATAGGCAGCAGCATGCTGATAGTGAAGCTAAAAAAAATTTGGAAGAAAATCTTCAACAGTTGGAAAACAGGGTGTCTGAGTTGGATTTGCAAGAAACACAGATGAAGACAAGGCTTAAAAAAATTCTTGGTGGTTCTGAAGGAAACAAGAATGAGCTTGAGAAACTGAAAAAGGAACTGCGTGTGATGGAGGAGAAACATCGTGATTCTAGGACTAAACATAAAAGCTTGGAGCTAAAAATTAGTGAAATAGAAAATCAGCTACGTGAATTGAAGGCTGATAGATATGAAAATGAGAGAGATGCTAGGCTGTCTCAGGCTGTGGAGGCTCTGAAACGCCTATTTCAAGGGGTCCATGGACGCATGACTGATCTTTGCAGGCCAACACAGAAGAAGTATAACCTTGCTGTTACTGTTGCTATGGGTAAATTTATGGATGCAGTTGTAGTTGAAGATGAAAAGACTGGAAAGGAATGCATCAAGTATTTGAAAGATCAAAGGCTTCCTCCTCAGACATTCATTCCTCTGCAATCAATTCGAGTGAAGCCAATCATGGAAAGATTGCGCACATTAGGGGGTACAGCGAAACTGGTTTTTGATGTGATTCAATATCCTTTTCAACCACTCAAGTTTGATCCTTCCTTGGAGAAGGCAATTCTCTTTGCTGTGGGAAATACTCTTGTTTGTGATGATCTTGAGGAGGCAAAAGTTTTAGGCTGGAGTGGTGAGAGGTTTAAAGTTGTGACTGTGGACGGAATTCTGCTGACAAAATCCGGCACAATGACTGGTGGCACTAGTGGTGGAATGGAAGCAAGGTCAAAACAGTGGGATGACAAGAAAATTGAAGGACTTAACAAAAAGAAAGAGCAGTATGAATCAGATTTGGAAAAGCTAGGATCAATAAGAGATATGCACCTCAAAGAGTCTGAAGCTGCTGGCAAAATTAGTGGACTCGAGAAGAAAATCCACTATGCTGATATTGAGGAGAAAAGCATCAAAGACAAACTTAGAAATTTGAGCCACGAAAAAAAGAACATCAAAGAAGAAATTGGTCGTATGAGTCCGGAACTCCAGAAGTTAAGAGATGCTGTTGATAAGAGGAAATCAGAAATAAGTGTGCTCGAGAAGGGCATAAATGAAAAAACAGATGGGATTTACCAAGAATTTAGCAAGAAAGTTAAGGTTGCAAATATCCGTGAATATGAAGAAAACCGACTCAAAGATGCTCAGAGTGTTGCGGAAGAGAGGCTAGATCTGAGTAGCCAAATTTCAAAATTAAAATATCAATTGGAATATGAGCAAAATAGGGACATGAGTTCAAGAATTCAAGAGCTAGAATCATCCCTGGATACTTTACAGAATAATTTAAAACGGGCACAGAACAAAGAAGCTGAAGTAAAGTTGGCTACCGAGAATGCTACCGAAGAGATTGACCAGCTTAAGAAAGAAATAAAAGAGTGGAAATCAAAGTCGGAAGATTGTGAGAAAGAAATCCAAGAATGGAAAAAGCAGGCTTCGTCAGCCACAACAAACATATCCAAACTTAATCGTCTGATAAACACCAAGGAGGCACATATTGAGCAGATGATTGTACAAAAACAGGAAATATTAGATAAGTGTGAATTTGAACAGATTAGCCTTCCAACCATATCTGACCCGATGGATACCGGCACCTCAACCCCATCTCCAGTTTTTGATTTTGATCAGCTAAGCAGGGCACTGAAAGATAAGCACTCTGACAGGGATAAGATTGAGGTGGAATTTAAACAAAAAATGGATTCCTTGGTATCTGAAATTGAAAGAACAGCACCAAATTTGAAGGCATTGGACCAATATGAGGCTCTTCTTGAAAAGGAAAAAGCTGTAACTGAAGAGTTTGAATTGGTGAGGAAAGAAGAGAAGGAGAAAGCTGATAGATTCAATTCAGTTAAGCAAAGGAGGTATGAATTGTTCATGGATGCTTTCAACCATATATCGGGCAATATAGATAAAATTTACAAACAACTCACAAAGAGTAGCACACATCCACTGGGTGGAACAGCATATTTAAACTTGGAAAATGAAGATGATCCTTTCCTACACGGCATCAAGTACACTGCTATGCCCCCAACAAAGCGCTTCCGTGATATGGAGCAGTTATCTGGTGGGGAGAAAACTGTTGCTGCTCTTGCTTTGTTATTTTCCATCCACAGCTACAAGCCTTCACCATTTTTCATATTGGACGAAGTCGATGCTGCATTGGATAACTTGAATGTCGCTAAGGTTGCTGGATTTATCCGTGCAAAGTCTTGTGAAGGAGCAAGGGTTAGCCAGGATGCTGATGGGGGCAACGGTTTCCAGAGTATTGTGATATCACTGAAAGACAGCTTTTATGACAAAGCTGAAGCCTTAGTTGGTGTTTACAGGGACTCTGAAAGAGGTTGTTCGAGGACTCTCACGTTTGATCTGACTAAATACCGTGAGTCATAG 3696 0.4188 MPSLPSPAGRIHRLEMENFKSYKGHQVIGPFFDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLRDLIYASDDKEKEQKGRRAFVRLVYQLNNNNGSNGSDTEITFTRAITSAGASEYRIDGNVVTWDVYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSDELKRDYEQFEEEKGEAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHLRLQEQLKSIKKEHFLWQLFNIEKDVAKTNEELDDDEKRRKEVMEELENFEREASKKKKEQAKYLKEIALREKKITEKSSRLDKSQPELLKLREEINRINSKIKKSNKELEKKRAERRRHADDIEELQKGIQDLTAKMAALQERGRDVRDKLQLDGDDLEEYFQIKEKAGMKTAKLREEKELLDRQQHADSEAKKNLEENLQQLENRVSELDLQETQMKTRLKKILGGSEGNKNELEKLKKELRVMEEKHRDSRTKHKSLELKISEIENQLRELKADRYENERDARLSQAVEALKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSIRVKPIMERLRTLGGTAKLVFDVIQYPFQPLKFDPSLEKAILFAVGNTLVCDDLEEAKVLGWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLNKKKEQYESDLEKLGSIRDMHLKESEAAGKISGLEKKIHYADIEEKSIKDKLRNLSHEKKNIKEEIGRMSPELQKLRDAVDKRKSEISVLEKGINEKTDGIYQEFSKKVKVANIREYEENRLKDAQSVAEERLDLSSQISKLKYQLEYEQNRDMSSRIQELESSLDTLQNNLKRAQNKEAEVKLATENATEEIDQLKKEIKEWKSKSEDCEKEIQEWKKQASSATTNISKLNRLINTKEAHIEQMIVQKQEILDKCEFEQISLPTISDPMDTGTSTPSPVFDFDQLSRALKDKHSDRDKIEVEFKQKMDSLVSEIERTAPNLKALDQYEALLEKEKAVTEEFELVRKEEKEKADRFNSVKQRRYELFMDAFNHISGNIDKIYKQLTKSSTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRAKSCEGARVSQDADGGNGFQSIVISLKDSFYDKAEALVGVYRDSERGCSRTLTFDLTKYRES* 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0892 1231 Coils Coil 844 927 - -
Amo02g0892 1231 Coils Coil 178 198 - -
Amo02g0892 1231 Coils Coil 413 447 - -
Amo02g0892 1231 Coils Coil 315 377 - -
Amo02g0892 1231 Coils Coil 455 510 - -
Amo02g0892 1231 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 1230 - -
Amo02g0892 1231 Pfam RecF/RecN/SMC N terminal domain 11 1212 IPR003395 -
Amo02g0892 1231 Coils Coil 245 293 - -
Amo02g0892 1231 Gene3D - 812 953 - -
Amo02g0892 1231 CDD ABC_SMC1_euk 11 165 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Amo02g0892 1231 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 978 1214 IPR027417 -
Amo02g0892 1231 Gene3D - 586 675 - -
Amo02g0892 1231 Coils Coil 738 758 - -
Amo02g0892 1231 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 10 1230 - -
Amo02g0892 1231 Coils Coil 690 710 - -
Amo02g0892 1231 PIRSF SMC 9 1228 IPR024704 GO:0005524|GO:0016887
Amo02g0892 1231 Gene3D - 954 1230 IPR027417 -
Amo02g0892 1231 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 279 IPR027417 -
Amo02g0892 1231 Gene3D - 10 206 IPR027417 -
Amo02g0892 1231 SMART SMC_hinge_2 525 648 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Amo02g0892 1231 CDD ABC_SMC1_euk 1110 1225 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Amo02g0892 1231 Pfam SMC proteins Flexible Hinge Domain 525 645 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Amo02g0892 1231 Gene3D - 504 585 - -
Amo02g0892 1231 SUPERFAMILY Smc hinge domain 489 697 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Amo02g0892 1231 Coils Coil 206 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0892 Amo-Chr2 13392582 13404378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0892 9 288 Structural Maintenance of Chromosomes family AT5G15920 24.211 3.13e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0892 K06636 - gmx:100785315 1879.37