Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0888 ACAGACCTCAACAGAAAAGACACAATTTTATTACATAAAATCTTTTTTTCAATGCCTGTATTCTCCGAGTTATTGGACCAAATTTTACCTGCCATAGGTAGAACTGCAAGAAGGATTCTAAGGCGGCGCCGTCAAGGGTGTGACTCCTACACGCCGGAGATTGTTGTGAACCTTCATGTTACCACGTACATTATTGTTCAAGATTTAGATATCTATAATGATGATGCTGAATGCGTTATTTGTTTGGAGGAGTTTGGCCATGGTAACGAAGATTCAAGTGTAGGAATTGTTCGCACAAATTGTTCGCATGTTTTCCATGATCGCTGCATGCTCCGTTGGCTCCGACAGTGTGCCAACTGTCAGTTGCCGTATTCTTGCCCATTGTGCCGCTGCATCATATTTCCAACTTCACATAGTCACGATAAATAG 429 0.4196 TDLNRKDTILLHKIFFSMPVFSELLDQILPAIGRTARRILRRRRQGCDSYTPEIVVNLHVTTYIIVQDLDIYNDDAECVICLEEFGHGNEDSSVGIVRTNCSHVFHDRCMLRWLRQCANCQLPYSCPLCRCIIFPTSHSHDK* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0888 142 ProSiteProfiles Zinc finger RING-type profile. 78 130 IPR001841 -
Amo02g0888 142 PANTHER RING ZINC FINGER PROTEIN-RELATED 72 134 - -
Amo02g0888 142 CDD RING-H2 78 130 - -
Amo02g0888 142 SUPERFAMILY RING/U-box 64 136 - -
Amo02g0888 142 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 72 134 - -
Amo02g0888 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 136 IPR013083 -
Amo02g0888 142 Pfam Ring finger domain 77 130 IPR001841 -
Amo02g0888 142 SMART ring_2 78 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0888 Amo-Chr2 13312363 13312791 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0888 52 138 C3H Transcription Factor Family AT5G47610 35.789 4.56e-10 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0888 - K10664 ahf:112701095 254.218