Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0844 ATGAGATCTTCGTTAGAGGCTTCACCATCTTCATCATGCAGATCGAAGAAACACAAGGATCTGAGCTCAAAACTCGTTTCTTCAGATTCGGTTTCGCTCAATACCAAGACACCGGAGAAACCACCGGAGCTGACGCGCCACACGCGCCGCACGCGCAATCGGGGCGTAGCGCTCTCGTTGTCGGAGGTGCGGAGAGTTGCCAAGGGCCTCCAGGAGCAGCGCGGCCGTGAAACGACGTTGTTTGGCGACAAATCTGCGAGGAGGCAGATCGAGCTGCGTTCGCCGAGCAAACCCCAAAAAACCAGTTCCGATGAAGAAGAAGCCTTCAAGCTTCCCGAAAAGTATGAGATTTTGGGCGAGTATTTTGCTAGGTTGGATTGTTCGATTCGACTGCTGCGCATGAAAGGAATGACACCGTCTTTCTCCAAAATCAGCCACAAGATTGAAAGTTTAACTGATAGGAGGTTTACACTTAGTCATTTGGCTCAGTTGAAATTCGTGTTGCCTGAGGCAATTGTGGCTAAGAAGGTGTTAGTGTTTGATGAGAAGACAAGTTGTATGAAGCCAGATCTGCATGTCACTATTAACTATGATGCGGTGGAGTTTGCATCAAAGTTGCCAACCGAAGGCGGCCGGGGCATGCTGTTGAGGAAGTTGTTCCGTGCGCGGCTGAGAGATTTTGTTGAATCCCATCCTGGGGGAGATGAAATTCCGGAAGAAGCGCTACCCGAACCATTCAACCCAAAGCAACATCGTCTATCAGACATATTGACAAGGCCTTTCTCATCTAAGGCGACAATATCGGATGCAGATGCAGCTCACCCTTCAACAGTATCATCGGCAGTCATTCCGGATAATGACACTGAAATAGACTTGTTAGAACCTGTTAGGACATCAATTGAATCCCTTAACCAGCAACCATCAGCAGCCTCTCATGTGCCTCAATCTTTCAGAAGACGGTTCTCTCAGAGGTTGAAGGAAAATGGAACAGATAATAATGCACTGGAAAAATTGCCATCAGATTCATTGCAAACTGTGGTTTTACCGGATTCAGAGTCAGGCCTGAGTGATAGACCTACCTCAGAAGGAGCCAGTAATGAAGTATGCCTCACAAATTGTTCTTCATCTGGTGCTCCACTTGCTACTCCATGCAAAACCATTGAACATACAGAAAATAATGGGTCTCAAAAATGCTTTGATGCTGTGTCAACCCCAGCCAAATGTATTTCTACTCCAGCCAGCATAACACCTGCATTGCCTACGCCTCCTAAGAGACAATTCATGAGTCCAGAGGATAACTCTTCCACTACTACTAACAAGTTGGTTAGGCGCCCACCTCCATCGCTAAGGTCGTTGAAATTCGAAACTCCGGTTAAAAATAAGGAGGCAGAGAAAGAGAAATTTGAAACTCCAGTTAAAAATAAGGAGGCAGAGGAAGAATATGATGATCTTTTGGATGTTCTCCCTGAGAGTCTTCTGCAATCGATTAGAGAAAAGGAAATACAAGCAATGGAGGAAAGAGATCCAGCTATTTCACAAGCAAAGAGACGGCGAAAAATGATCGCTGGCCTACCTAAGATCTTTAACATGATTCACCTCTTGCTCCAGTCAATGAACCGCTCCGTTATCACGAAAGAGGAGCTTGTGAGCAAGATAATCTCTGGCAATTGCGAAGTAGAAGAACAATTGAATTTGTTGCTAGAACTAGCACCAGATTGGATTTCTGAGAAGTTGGCCTCTAGTGGAGATTTCCTTTTCTGCATAAATAAAATGGTGGACGCCGTGACCATACGCGCATCACTTCAAGAAGCAAAATGA 1818 0.4582 MRSSLEASPSSSCRSKKHKDLSSKLVSSDSVSLNTKTPEKPPELTRHTRRTRNRGVALSLSEVRRVAKGLQEQRGRETTLFGDKSARRQIELRSPSKPQKTSSDEEEAFKLPEKYEILGEYFARLDCSIRLLRMKGMTPSFSKISHKIESLTDRRFTLSHLAQLKFVLPEAIVAKKVLVFDEKTSCMKPDLHVTINYDAVEFASKLPTEGGRGMLLRKLFRARLRDFVESHPGGDEIPEEALPEPFNPKQHRLSDILTRPFSSKATISDADAAHPSTVSSAVIPDNDTEIDLLEPVRTSIESLNQQPSAASHVPQSFRRRFSQRLKENGTDNNALEKLPSDSLQTVVLPDSESGLSDRPTSEGASNEVCLTNCSSSGAPLATPCKTIEHTENNGSQKCFDAVSTPAKCISTPASITPALPTPPKRQFMSPEDNSSTTTNKLVRRPPPSLRSLKFETPVKNKEAEKEKFETPVKNKEAEEEYDDLLDVLPESLLQSIREKEIQAMEERDPAISQAKRRRKMIAGLPKIFNMIHLLLQSMNRSVITKEELVSKIISGNCEVEEQLNLLLELAPDWISEKLASSGDFLFCINKMVDAVTIRASLQEAK* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0844 605 MobiDBLite consensus disorder prediction 67 107 - -
Amo02g0844 605 MobiDBLite consensus disorder prediction 25 39 - -
Amo02g0844 605 Pfam DNA replication factor CDT1 like 111 175 IPR014939 -
Amo02g0844 605 MobiDBLite consensus disorder prediction 267 284 - -
Amo02g0844 605 Pfam DNA replication factor Cdt1 C-terminal domain 491 577 IPR032054 -
Amo02g0844 605 Gene3D - 480 605 IPR038090 -
Amo02g0844 605 MobiDBLite consensus disorder prediction 1 107 - -
Amo02g0844 605 MobiDBLite consensus disorder prediction 427 444 - -
Amo02g0844 605 MobiDBLite consensus disorder prediction 267 286 - -
Amo02g0844 605 MobiDBLite consensus disorder prediction 413 452 - -
Amo02g0844 605 CDD Cdt1_c 482 602 IPR032054 -
Amo02g0844 605 PANTHER DNA REPLICATION FACTOR CDT1 17 605 IPR045173 GO:0003677|GO:0030174|GO:0071163
Amo02g0844 605 SUPERFAMILY "Winged helix" DNA-binding domain 100 246 IPR036390 -
Amo02g0844 605 SMART CDT1_2 111 244 IPR014939 -
Amo02g0844 605 CDD Cdt1_m 95 247 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0844 Amo-Chr2 12420677 12424098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0844 403 603 Core DNA Replication Machinery Family AT2G31270 46.667 5.23e-42 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0844 K10727 - gmx:100778818 465.307