Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0816 ATGGAATTCTACAATAACCTAGAAGACTACTCGAAGAGTTCGTCGAGCGAAGAAACCGATCGGTCGTCGTACGAGCAAGCCGGAGATCATCAAGAGATGGGAACAGGAAGATCCTATGAGTGTGTGTTTTGCAAGAGGGGATTCACCACAGCACAAGCTTTGGGTGGACACATGAACATTCATAGAAAAGATAGAGCCAATAACAAAGCCAAAATTCCAGCTTCTAGTTCAAGCAAGGTTGATGATGAGAACTACTATGCAGATCTAGGGCACTATTCATCACCAATTCCAAGCTATCTTGCAAGAAATGGAAATTATCATCATGAGGTAGAAAATAATAATAATAATAACCCTTACCTTCCAATTTATTTTCCTCCACACACTAATTCCCATCATGTGCAATATAATGAGATTTTGTGTGTTGAAAACCAAAGGGAAAATGGGAAATTATTGTTTGGACAAGATTGGAGGCAAAGGGGTAATAATTTGAGTTTGTACACTAATAATAATCCAATATGTGTACATGAGAATAATAATCACATGATAAAAGACAAGGGTGAAGATGGTGGCCTTGATTTGGAGCTTAGACTTGGTCATTATCCATAA 606 0.3812 MEFYNNLEDYSKSSSSEETDRSSYEQAGDHQEMGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRANNKAKIPASSSSKVDDENYYADLGHYSSPIPSYLARNGNYHHEVENNNNNNPYLPIYFPPHTNSHHVQYNEILCVENQRENGKLLFGQDWRQRGNNLSLYTNNNPICVHENNNHMIKDKGEDGGLDLELRLGHYP* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0816 201 Gene3D Classic Zinc Finger 11 90 - -
Amo02g0816 201 MobiDBLite consensus disorder prediction 13 27 - -
Amo02g0816 201 MobiDBLite consensus disorder prediction 1 31 - -
Amo02g0816 201 Pfam C2H2-type zinc finger 39 63 - -
Amo02g0816 201 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Amo02g0816 201 SUPERFAMILY beta-beta-alpha zinc fingers 37 65 IPR036236 -
Amo02g0816 201 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 5 201 - -
Amo02g0816 201 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Amo02g0816 201 PANTHER OS07G0101800 PROTEIN 5 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0816 Amo-Chr2 11879964 11880998 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0816 39 103 C2H2 Transcription Factor Family AT5G43540 49.275 7.30e-14 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo02g0816 zf-C2H2_6 1.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0816 - - ahf:112718298 375.17