Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0796 ATGAGCGAGAAGTTTTGTGTGAGTGATGAAGACAAGGGTGTGTTGGAATCTGTGTTGGGTGCAGAAGCTGTTGCATACTTTGTTTCTGCGGTTTCCAATAATTTCTTCTCCAGCGTGGTTGCTTCTGCTTCGGCTCTAGCCGGAACTGATGCTGGCCTCCGGCGGCGGCTGTGCCAGGTTCTAGAGGGTTCCAAGTGGAATTATGCTGTGTTTTGGCAGGTTGCTGGCCTGAAATCTGGTGGCTCCGCCTTGATTTGGGGCGATGGCCAATGCTGCGATCCCAAAGGGGGCGGAGCTGGCGAGGGAGGATCTGAAGGGGATTGGAGTGGAGTTAGTAAGGGTGATGAAGAGGAGCTGAGAAAGAAGGTGCTGCAAAAGCTTGATGCATACTTTGCTTGCTCTGTGTCGAAAGAGGCGAATTATGCAAGATTAGATAGGGTTTCGGATTTGCATATGTTTTACTTGGCCTCAATGTATTATATATTTGGTTTTGATTCGCCTTGTGGCCCTGGTTGTTCTTTCAAGTCTGGCAAATCAATTTGGGTTTCTGATTCTGCTAGCTGTTCAAACCAACTAGAATCAAGGTCATTTCTTGGGAGATCAGCTGGTCTTCAAACGGTTGTTTTTGTGCCTCTTAAAGCCGGAGTTGTTGAGCTTGGTTCCGTGGAAACAGTGCCAGAAGACCAGGGTGTTTTGGATTTGGTCAGGACAGCATTTGGTGAATCTAGTTCTGGACAGGCGAAGGCATTTCCGAAGATTTTCGGGCGTGAATTAAGCGTTGGTGGTGGGGATGCGAAATCTCAGTCAATAACCATTAGTTTCTCACCGAAGTTGGAAGATGATTCTGGTTTCACTTCAGACTCTTATGAAGTTCAAGCTCTAGCAGCAAACCATGGATATGGGAATCCTTCCAATGGGAGCATGGGTGAAAATAGTGAAGCGAAATTGTTCCCTCAAATGATTGGTGGGAATTACAACGCTCAAACAAGGGTTTCGTCTCTAGATCTTGGAAATGAAGACTCCTCCTCGACTCATTTGGATGAGCGGAAGCCCCGAAAAAGAGGTAGAAAGCCTGCGAATGGAAGAGAGGAACCCCTGAATCATGTTGAAGCCGAGAGACAAAGGAGGGAAAAGCTAAACCAAAGGTTCTACGCCTTGAGAGCTGTTGTTCCGAATATATCTAAAATGGACAAGGCATCTCTACTTGGCGATGCGATTACGTATATCACTGATCTGCAGATGAAGATCAAGGTGTTGGAAACAGAGAAGAACATGAATAACAACAATGAACCAATGTTTCCTTTTTCGGATATAGATTTCCAAGCCAGAGAGGATGACACAGCAGTCGTGCGAGTAAGTTGCCCCTTGGATCTCCACCCGGTTTCCAGAGTCATTAAGACATTCCAGGAGCATCAAATCATGGCTCCAGAGTCAGGTGTTTCAACATCGGAGGGAAAGATGATTCATACATTCTCCATAAGAGCGCAGGGCAGCGAGGCTGCTGCAATACAATTGAAGGAAAAACTTGAAGCATCCTTATCCAAAAACTGA 1551 0.4629 MSEKFCVSDEDKGVLESVLGAEAVAYFVSAVSNNFFSSVVASASALAGTDAGLRRRLCQVLEGSKWNYAVFWQVAGLKSGGSALIWGDGQCCDPKGGGAGEGGSEGDWSGVSKGDEEELRKKVLQKLDAYFACSVSKEANYARLDRVSDLHMFYLASMYYIFGFDSPCGPGCSFKSGKSIWVSDSASCSNQLESRSFLGRSAGLQTVVFVPLKAGVVELGSVETVPEDQGVLDLVRTAFGESSSGQAKAFPKIFGRELSVGGGDAKSQSITISFSPKLEDDSGFTSDSYEVQALAANHGYGNPSNGSMGENSEAKLFPQMIGGNYNAQTRVSSLDLGNEDSSSTHLDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIKVLETEKNMNNNNEPMFPFSDIDFQAREDDTAVVRVSCPLDLHPVSRVIKTFQEHQIMAPESGVSTSEGKMIHTFSIRAQGSEAAAIQLKEKLEASLSKN* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0796 516 CDD bHLH_AtAIB_like 360 423 - -
Amo02g0796 516 SMART finulus 369 418 IPR011598 GO:0046983
Amo02g0796 516 MobiDBLite consensus disorder prediction 341 374 - -
Amo02g0796 516 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 366 428 IPR036638 GO:0046983
Amo02g0796 516 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 53 239 IPR025610 -
Amo02g0796 516 Gene3D - 356 429 IPR036638 GO:0046983
Amo02g0796 516 Pfam Helix-loop-helix DNA-binding domain 367 413 IPR011598 GO:0046983
Amo02g0796 516 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 363 412 IPR011598 GO:0046983
Amo02g0796 516 PANTHER MYC 1 515 IPR045084 GO:0003700|GO:0006355
Amo02g0796 516 MobiDBLite consensus disorder prediction 335 374 - -
Amo02g0796 516 PANTHER TRANSCRIPTION FACTOR BHLH3 1 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0796 Amo-Chr2 11420005 11422336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0796 1 515 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 47.601 6.89e-151 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo02g0796 bHLH-MYC_N 1.2e-40 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0796 - - adu:107473437 973.77