Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo02g0754 | ATGTCGTCGGAAGAGCCCACTGTTGTAGTAGCACCACCAGCTTCGGAGCCAGCACCCGAACCAACCACCAACACCGAGCCTCCTCAAGAAGACAAAACTGAACCCGAACCTGCTGCCGAAGCAACAGAAGAAGCCACTAAAGCTAAGAAAACCAAGGAGCCCAAACCTAAGAAGGCTTCCAAGCCTAGAAGCCCACCGTCTCATCCTCCTTACCAAGAGATGATCAAGGACGCTATTGTTACGTTGAAGGAGAAAAACGGTTCGAGCCAATACGCGATTCAGAAGTTTCTCGAAGAAAAGCATAAGCAGTTTCCATCGAACTTCAGGAAGCTTCTTTTGTTCAATTTGAAGAAGCTCGTAGCTTCTGGAAAGCTCGTTAAGGTTAAAGGTTCCTTCAAGCTTCCGGCGACAAAGGCGCCCGCATCATCAGCGCCTTCGCAGGCAAAGAAGCCCGCGGCTACGAAGACCAAGACTAAGACTAAGACCAAACCCAAGCCCAAGCCCGCTGTCAAGGTGAAGGCAACAAAAGCAAAGACAACCAAGACTAAATCGGTGAAATCAGTTTCAGCTAAGTCTAAGCCCAAGCCCGCTCCAAAGCCCAAGGCTGTGGCGAAGCCTAAAGCAGCTGCAGCAGCGAAGCCCAAGGCTGCTGCAGCTAAGACCAAAGCAAAGCCCAAGGCAGCTGCTAAGCCACCGGCAAAAGTGTCGAGGATGTCGACTAGGGCTTCGCCAGGAAAGAAGGCTGCACCTGCCGCAAAGCCTGCAGCAAAGAAGGTTGCGGCAGCAAAGAAGAGCGTGAAGCCCAAGAGCGTAAGGTCTCCGGCGAAGAGGGCTTCGGTGAAGAGGGGTGGAAGGAAGTGA | 861 | 0.525 | MSSEEPTVVVAPPASEPAPEPTTNTEPPQEDKTEPEPAAEATEEATKAKKTKEPKPKKASKPRSPPSHPPYQEMIKDAIVTLKEKNGSSQYAIQKFLEEKHKQFPSNFRKLLLFNLKKLVASGKLVKVKGSFKLPATKAPASSAPSQAKKPAATKTKTKTKTKPKPKPAVKVKATKAKTTKTKSVKSVSAKSKPKPAPKPKAVAKPKAAAAAKPKAAAAKTKAKPKAAAKPPAKVSRMSTRASPGKKAAPAAKPAAKKVAAAKKSVKPKSVRSPAKRASVKRGGRK* | 287 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo02g0754 | 286 | SMART | h15plus2 | 65 | 131 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Amo02g0754 | 286 | CDD | H15 | 65 | 144 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Amo02g0754 | 286 | PANTHER | HISTONE H1 | 21 | 283 | - | - | |
| Amo02g0754 | 286 | PRINTS | Histone H5 signature | 54 | 75 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Amo02g0754 | 286 | PRINTS | Histone H5 signature | 81 | 98 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Amo02g0754 | 286 | PRINTS | Histone H5 signature | 217 | 236 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Amo02g0754 | 286 | PRINTS | Histone H5 signature | 195 | 212 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Amo02g0754 | 286 | PRINTS | Histone H5 signature | 161 | 175 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Amo02g0754 | 286 | MobiDBLite | consensus disorder prediction | 27 | 51 | - | - | |
| Amo02g0754 | 286 | MobiDBLite | consensus disorder prediction | 1 | 78 | - | - | |
| Amo02g0754 | 286 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 67 | 136 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Amo02g0754 | 286 | Pfam | linker histone H1 and H5 family | 68 | 134 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Amo02g0754 | 286 | Gene3D | - | 62 | 147 | IPR036388 | - | |
| Amo02g0754 | 286 | MobiDBLite | consensus disorder prediction | 154 | 180 | - | - | |
| Amo02g0754 | 286 | PANTHER | HISTONE H1.1 | 21 | 283 | - | - | |
| Amo02g0754 | 286 | SUPERFAMILY | "Winged helix" DNA-binding domain | 64 | 144 | IPR036390 | - | |
| Amo02g0754 | 286 | MobiDBLite | consensus disorder prediction | 260 | 286 | - | - | |
| Amo02g0754 | 286 | MobiDBLite | consensus disorder prediction | 134 | 286 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo02g0754 | Amo-Chr2 | 10724315 | 10725789 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo02g0754 | 69 | 135 | Single Myb Histone (SMH) Gene Family | AT1G72740 | 37.313 | 7.13e-08 | 50.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo02g0754 | K11275 | - | tcc:18613215 | 126.331 |