Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0685 GTTTTGAATGTTGGTGCAAGTGGCTTCACCATCCGCCTAGATCGGAGTGGAATTGGGGGATTTCGGCATTGTCGTTGCAGAGGGTTGGGAGAGGGAGACCGGTTTTTTCAGCTGCTGTCCATCTCGTATGCGGCGAAGGAATGGAGCACTTATGTTTCTAACCTGGACATAATGATTAGACTTTGGAAGGGGATGGATAATGTTCTGTTGAGTAATGAGTGGTTTGCTAATAAATGTTGTGGCATGCATGAGTGTATAGCAGATTTCCAAGACTTTGAAATTGGTTTTTATGTTCTTGCAATTGATTTTGATCAGATGGAATTCACAAAAGGAAATAAGGGTTGCGACACGATGGAAGGAAGCCAAAGGGAGGAGGGGTGTAGGCCTGATGAGGAATTGGATGATGCATGCGGCGGTGACAGCATGAATGGAGTATCGGATGAGTATCCATCCGATTATGCTTATGTATTCGGGTTGTCAGAACAAGATATAATAAGAAAAGTCTTTCGAAGTGAGGAAAGAGCATATGATTTTTACAGTAAATTTGGCAGATGTCATGGATTTGGCGTGCGCAAGGGTGATTATGGAAAGGATGAAGAAGGAAATTTGATAAGGAGAAGGTTGGATAGAAAAAGGGGACACCGTCCTGAAACAAGGACTAATTGCTTGGCGAAGCTGTCGATTTATCTGGATAGGGAAAACTCAACATGGAAGGTTCGCAAAGTAATCTTGGATCACAATCATGAACTGACACCTCGAAGGATGGTGCACATGATTCCGAAATTCCGTCTCCGAGAATACCGCAACAACGAGCTAGTTGCGCAATTCAATTCAATATATAGCACCCCTGTTCTAACAACGTGTCTGGATCCTATTGAGAGGTGCGCTGCAGATGTTTACACGAGAGCTATTTTTGTACTAGTTAAGAAAGAGATTGACGGTGTTGGAGCGGTTAATTTTGTGAGTAAAAGGAGGGTCTCCACAACAATGGTATACACAATGGAAGAGTATGGTCATCCCGGCCACAACATTGTTACCTTATTTGATAGGACCATGACTAGAATGGAATGTCGGTGCCGATTCTGGGAGAAGGAGGGCTTTCCATGCAGACACATATTCTTTGTCATGAAGCACGAGCATTTAAAGGATATTCCAAAT 1158 0.4326 VLNVGASGFTIRLDRSGIGGFRHCRCRGLGEGDRFFQLLSISYAAKEWSTYVSNLDIMIRLWKGMDNVLLSNEWFANKCCGMHECIADFQDFEIGFYVLAIDFDQMEFTKGNKGCDTMEGSQREEGCRPDEELDDACGGDSMNGVSDEYPSDYAYVFGLSEQDIIRKVFRSEERAYDFYSKFGRCHGFGVRKGDYGKDEEGNLIRRRLDRKRGHRPETRTNCLAKLSIYLDRENSTWKVRKVILDHNHELTPRRMVHMIPKFRLREYRNNELVAQFNSIYSTPVLTTCLDPIERCAADVYTRAIFVLVKKEIDGVGAVNFVSKRRVSTTMVYTMEEYGHPGHNIVTLFDRTMTRMECRCRFWEKEGFPCRHIFFVMKHEHLKDIPN 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0685 386 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 168 257 IPR031052 GO:0006355
Amo02g0685 386 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 264 385 IPR031052 GO:0006355
Amo02g0685 386 ProSiteProfiles Zinc finger SWIM-type profile. 342 380 IPR007527 GO:0008270
Amo02g0685 386 Pfam FAR1 DNA-binding domain 178 251 IPR004330 -
Amo02g0685 386 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 168 257 - -
Amo02g0685 386 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 264 385 - -
Amo02g0685 386 SMART 26again6 355 382 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0685 Amo-Chr2 9062711 9065540 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo02g0685 FAR1 6e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0685 - - aip:107607282 209.92