Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0639 ATGCGACAAGGGAAGAAGTTGAAAAATAAGAATGGTGATTTTGTTCGTTACACGTATCTGTGTAATAGACAAGGGTTCAGAGACAAGAAGTGGCTAGAGAAGGTGGATCGGAAGAGGGAGCACAAGGTAGTGACTCGTTGCGGGTGTCCTGTGGAGATGCGTATTAAGCCTAAAGGGGATAGTGGGAGATGGATTGTGTCTCTTTTTGTGGAGGAACATAACCATGAGCTGCTGCCTATGAAGTATGTGGACTATCTACCTGCACACCGGAGATTTGTGGAAAGCCGATATGGCATACTTGAGTTTGTAACCAATTTTCAACGATGTGTGGACTTCCTGAGGGACAATGAGGAAGAGCTTGACTTCCGATCATCGTACGGGACACCGGTCCTTCAAACGCAGTTTCCGGAGTTAGAAAAGTCAGGGGCAATAAACTTCACACGGGAAATATTCTCAAGATATCGTGAGTCACTTAAAAGGTGTGTTCGGGTGACCATATTGGAGTGCATCGAACGTGAGGATAGGTGTGTGTATGTAACACAGAAGTATAGAAGACCGAATTCACGGTGGGATGTGGTTCATATGAAAAGGAAAGAGGAGTTTCTTTGCAGTTGCCTGAGGATGGAGTCATTTGGTTTGCCATGTGTTCACATTCTGGCAGTTTTGGTTAGGTTAGATATTGATTCCCTTCCTAAGAGTCTTGTGTTGGCGCGGTGGTCCAAAGCAGCGAAGGAAGATCTTTGCTACGAACCGTTAAGCAGCCGATATAGTGATGCGGGTGTTTTGTATCGGAGTAGAGTGGGTGCATTCCTCCAGCACTGCAAGCGGTTAGCAAAAGTAGCATGTATTAGGGAGGAGGACTTTAGGCAATATTTAGCTAAGGTTGTAGAGGATACATGTTGGCTTGAAAAAAAAAATGGACTAGGAGGTGCAGTTGCTGGGAATGGAGCTGGCAACAGTGGGGGAGGGGTTAGGGATCCTATTAGTGTCAGGACGAAAGGCACAGGACGTGGTAATGAACCTCTTGGGTCTAGGGGTATCAAGCGGCGTAAGTGCAGCACATGCGGTTGTGTTGGTCATCGAAGGACCCGCTGTCCCAATGCTCCACCGACATCAGCACCCTCAACCCAGGGCGAGGGTGCAAACATCGGTTTCGATGGATTAATTGGTGGGTATTCGGAAGTGCTCATTCAGCATGGGTTGCTAATGGTGCAAGTATGTGTTATTGGTCATGCTGATGTGTTGGGATCTCTGATGATTTTAAGGTGGGCTGGTGGTGTTGGTGTGCCTCATAATATTTCACTTAGAGATGCTGTGACTGCAGTGCGGGCAAGGATCGAGTGTGGACTTCTGACTGAAGCATTTATGCATCACAGGAATCTCTGCACAAGAGTGAAAGAAAAGAGCTTCAATAAAGGATCACCTCTAGAGACTGCTGATGTACCAAAAGGGCAACTTAGTTATTGGGTGGAGGTCTTGGTAACCGAGATTTGTTGCTTGTGTATAAGGAGGAACTTAGCGAATGGAATGCTAGAATTGCCATAG 1545 0.466 MRQGKKLKNKNGDFVRYTYLCNRQGFRDKKWLEKVDRKREHKVVTRCGCPVEMRIKPKGDSGRWIVSLFVEEHNHELLPMKYVDYLPAHRRFVESRYGILEFVTNFQRCVDFLRDNEEELDFRSSYGTPVLQTQFPELEKSGAINFTREIFSRYRESLKRCVRVTILECIEREDRCVYVTQKYRRPNSRWDVVHMKRKEEFLCSCLRMESFGLPCVHILAVLVRLDIDSLPKSLVLARWSKAAKEDLCYEPLSSRYSDAGVLYRSRVGAFLQHCKRLAKVACIREEDFRQYLAKVVEDTCWLEKKNGLGGAVAGNGAGNSGGGVRDPISVRTKGTGRGNEPLGSRGIKRRKCSTCGCVGHRRTRCPNAPPTSAPSTQGEGANIGFDGLIGGYSEVLIQHGLLMVQVCVIGHADVLGSLMILRWAGGVGVPHNISLRDAVTAVRARIECGLLTEAFMHHRNLCTRVKEKSFNKGSPLETADVPKGQLSYWVEVLVTEICCLCIRRNLANGMLELP* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0639 514 SMART 26again6 201 228 IPR006564 GO:0008270
Amo02g0639 514 ProSiteProfiles Zinc finger SWIM-type profile. 191 226 IPR007527 GO:0008270
Amo02g0639 514 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HOS1 418 514 IPR044718 GO:0004842|GO:0016567
Amo02g0639 514 MobiDBLite consensus disorder prediction 319 345 - -
Amo02g0639 514 Pfam FAR1 DNA-binding domain 7 79 IPR004330 -
Amo02g0639 514 Pfam Nuclear pore complex assembly 418 514 IPR025151 -
Amo02g0639 514 Pfam SWIM zinc finger 203 223 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0639 Amo-Chr2 8414989 8418537 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo02g0639 ELYS 3.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0639 - - adu:107485726 600.127