Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo02g0619 | ATGGAAGCAGCTACAGCAACTACTACTTCCTCTCAGTCTCGCCAGAGAAAGCTGAAGAGAAAGCGCGCCGCCGCGTTGGCGAGTGACCCCCATCTCGAGCGACTTAACTCGCTGCCCTGGAACCCTTCGTTTCCACGAAACAATGACGAAGATGATAACAACAACGAAAACGATCCCTTTGCTATGCTCGCTACTGGCTCAAACGAGCTCGAAGGAGGTTTCCTCTCGCTCGAGGAGATCGACGAGGCTGATTACGGTTTTTCCATTCCTGAACCTCAAATTAACGAGAAGAAGAACCAGAAGAAGAATCATAAACTCGACGAGAATGTGATAGAAGAGAAGAAGAAGAAGGAAGAAGAAGAAGGAGATGATGGAGTTGGCGGTGGCGGCGGCGGCGGTGGTGGTAGCGGTGAGGTTGAAGTGAAGAAGGAAAAGAAAAAAGACAAGAAGAAGAAGAAAAAAAAGAAGACAAAGAAGAATAAGAAGAAGAAGGAGGAGGAAAAGGAAAAGGAAGAGGAAGCGGTTACCGAAAACCAGAATGTTGAGAAGCCAGATACTGGTCTAGATACTGATGTGAAGGATGATGATGATGTTGGGGAAGACTTTGATGAAACTGAATTTTATGCATGGAATGAGTTGAGGCTTCATCCTTTGCTGATGAAAGCAATTTACAAGCTTGGTTTCAAGGAACCAACGCCAATTCAGAAAGCTTGTATTCCTGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTGCTGAGACAGGATCTGGTAAAACACTTGCATTTGGTTTGCCCATTTTGCAACGTATTTTGGAGGAACGGGAGAAGGCTACAAAGATGGAGGAAGAAAGGGGTAAAGAGCCAGAAAAATATGCTCCTACAGGAATTTTGAGGGCTCTAATTGTTGCCCCAACCAGAGAGCTTGCTATTCAGGTAACTGATCATCTGAAAGCAGTAGCTAAGTATATTAATGTTAGGGTGACCCCTATTGTTGGGGGAATTTTAGCCGAAAAGCAGGAGAGACTTTTAAAATCAAGACCTGAGATTGTTGTTGGAACTCCAGGGAGGTTGTGGGAACTTATGTCAAGTGGAGAAAAGCATCTAGTTGAGTTACATTCATTGTCTTTCTTTGTGCTTGATGAGGCTGATCGAATGGTACAAAACGGTCATTTTAAGGAGTTGCAATCAATAATTGACATGCTTCCCATGTCAAATATCTCCGCTGAAGATAATTCTCAACATGCACAAAATTGTGTTACAGTTTCAAGCTACCAAAGAAAGAAAAGACAAACTCTTGTGTTTTCAGCTACTGTTGCACTTTCTGCTGATTTTCGCAAGAAGCTTAAGCGCGGTTTAGTAAAACAAAAACAATCATTCACAGAGGAACTGAATTCTATTGAAACTCTTTCTGAACGAGCTGGAATGAGATCCAATGCTGCAATTATTGATCTTACCAACCCGTCAATATTGGCAACCAAGCTTGAGGAATCATTTATTGAATGCAGGGAAGAAGATAAAGATGCCTACTTGTATTATATTTTGACTGTCCATGGACAAGGTCGCACCATAGTTTTCTGTACATCAATTGCAGCTTTGCGCCATATTTCTTCCATACTGCGGATTCTTGGCATTGATGTTTGGACTCTGCATGCACAAATGCAGCAGCGAGCACGTTTAAAGGCCATGGATCGTTTTCGTGAAAGTGAAAATGGCATACTAGTTGCTACGGATGTTGCTGCAAGGGGTCTTGATATTCCTGGTGTTAGAACTGTTGTCCACTATCAGCTTCCGCATTCAGCAGAGGTTTATGTGCATAGAAGTGGAAGAACAGCTAGAGCTTCTGCTGAAGGTTGTAGCATTGCTTTAGTCTCACCAAAAGAAACGGCAAAGTTTGCTTCGCTGCTCAAATCATTTTCTAAGGACAATTTTCAGCGGTTTCCTTTACAGAACTCATACATGCCAGAGATTTTAAAACGATTGTCTCTTGCACGCCAAATTGACAAAATAACACGAAAGAATTCGCAGGTGAAAGCTGAGAAAAACTGGTTTGATCGAAATGCTAACTCAGTTGAATTAGTTACTGAAAATGACGACAGTGAGGAGGAACAAGTGAACAAACACAAGCAAATGAAAGCCAGTTCTAAACAGTTGAAGACATTGCAACAGGAGCTCAAAATGTTGATTTCACGTCCTTTACAATCAAAGACATTTTCACATCGATATTTAGCAGGGGCTGGTGTCACACCTGTCATGCAGGAACAATTGCTACAATTAGCAAAGCAAAAACTAAATGATCGCCCGGGCTCAGGAGTAGGCAAGAAGGGAAAATTGGTTGTGATTGGTCAAGATTGTGTTGAAGCACTTCAGGCACTCCGGAATGCTGGTGAAGAGGTGCGCATGGATGTCAAGGATTTTGCTGGAAAACRGAGAAATATAGAAAATCGGAAAAGAAAAAGAAAAGAGGAGAAGAAACGTTTGCGTGATCAGCGAAGAAAGCAGAAGAAAAAGCTAAAACAGGACAATCAATAG | 2532 | 0.4242 | MEAATATTTSSQSRQRKLKRKRAAALASDPHLERLNSLPWNPSFPRNNDEDDNNNENDPFAMLATGSNELEGGFLSLEEIDEADYGFSIPEPQINEKKNQKKNHKLDENVIEEKKKKEEEEGDDGVGGGGGGGGGSGEVEVKKEKKKDKKKKKKKKTKKNKKKKEEEKEKEEEAVTENQNVEKPDTGLDTDVKDDDDVGEDFDETEFYAWNELRLHPLLMKAIYKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRILEEREKATKMEEERGKEPEKYAPTGILRALIVAPTRELAIQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKSRPEIVVGTPGRLWELMSSGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNISAEDNSQHAQNCVTVSSYQRKKRQTLVFSATVALSADFRKKLKRGLVKQKQSFTEELNSIETLSERAGMRSNAAIIDLTNPSILATKLEESFIECREEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSILRILGIDVWTLHAQMQQRARLKAMDRFRESENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALVSPKETAKFASLLKSFSKDNFQRFPLQNSYMPEILKRLSLARQIDKITRKNSQVKAEKNWFDRNANSVELVTENDDSEEEQVNKHKQMKASSKQLKTLQQELKMLISRPLQSKTFSHRYLAGAGVTPVMQEQLLQLAKQKLNDRPGSGVGKKGKLVVIGQDCVEALQALRNAGEEVRMDVKDFAGKXRNIENRKRKRKEEKKRLRDQRRKQKKKLKQDNQ* | 844 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo02g0619 | 843 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 494 | 655 | IPR001650 | - | |
| Amo02g0619 | 843 | Coils | Coil | 146 | 181 | - | - | |
| Amo02g0619 | 843 | SMART | helicmild6 | 534 | 615 | IPR001650 | - | |
| Amo02g0619 | 843 | MobiDBLite | consensus disorder prediction | 146 | 161 | - | - | |
| Amo02g0619 | 843 | PANTHER | ATP-DEPENDENT RNA HELICASE DDX24 | 94 | 764 | - | - | |
| Amo02g0619 | 843 | SMART | ultradead3 | 227 | 467 | IPR014001 | - | |
| Amo02g0619 | 843 | Coils | Coil | 811 | 843 | - | - | |
| Amo02g0619 | 843 | Coils | Coil | 94 | 123 | - | - | |
| Amo02g0619 | 843 | MobiDBLite | consensus disorder prediction | 813 | 835 | - | - | |
| Amo02g0619 | 843 | Gene3D | - | 492 | 730 | IPR027417 | - | |
| Amo02g0619 | 843 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 299 | 630 | IPR027417 | - | |
| Amo02g0619 | 843 | MobiDBLite | consensus disorder prediction | 162 | 190 | - | - | |
| Amo02g0619 | 843 | Coils | Coil | 711 | 731 | - | - | |
| Amo02g0619 | 843 | MobiDBLite | consensus disorder prediction | 95 | 124 | - | - | |
| Amo02g0619 | 843 | Pfam | Helicase conserved C-terminal domain | 506 | 614 | IPR001650 | - | |
| Amo02g0619 | 843 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 140 | 403 | IPR027417 | - | |
| Amo02g0619 | 843 | MobiDBLite | consensus disorder prediction | 1 | 199 | - | - | |
| Amo02g0619 | 843 | CDD | SF2_C_DEAD | 495 | 624 | - | - | |
| Amo02g0619 | 843 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 379 | 387 | IPR000629 | - | |
| Amo02g0619 | 843 | Pfam | DEAD/DEAH box helicase | 232 | 440 | IPR011545 | GO:0003676|GO:0005524 | |
| Amo02g0619 | 843 | Gene3D | - | 140 | 458 | IPR027417 | - | |
| Amo02g0619 | 843 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 240 | 457 | IPR014001 | - | |
| Amo02g0619 | 843 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 208 | 236 | IPR014014 | GO:0003724 | |
| Amo02g0619 | 843 | MobiDBLite | consensus disorder prediction | 810 | 843 | - | - | |
| Amo02g0619 | 843 | CDD | DEADc_DDX24 | 219 | 484 | - | - | |
| Amo02g0619 | 843 | PANTHER | RNA HELICASE | 94 | 764 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo02g0619 | Amo-Chr2 | 8026934 | 8033671 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo02g0619 | 209 | 655 | Eukaryotic Initiation Factors Gene Family | AT5G11200 | 27.389 | 9.99e-41 | 154 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo02g0619 | K14805 | - | gmx:100806018 | 1077.77 |