Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0563 ATGGAGTTGATGCAAGAATCCAACAAAGGCTACTCTCAAGATTTGGAAGAAGAAGAGGAGGAGGAAGAAGCACCGGGAGAAGAAACCACCACCGCCGCCGGGTTACACCATCATCAACATCAAGATGCAACAACATCAAATTACTTCAACCACACAACAAGAATGAATCAAAATCAACCGCAACCGCAACCGCAACAGTTAGTAGACTTCATGGACTTGTCACTTGGGACAAACATCAACCACCATGAAGGCGTCAACAATTTCCAAGGATACTCCTCCTCCTCCGCCGCCGCCGCCGCCACCACCACCACCACAAATAATACCAATCTACAACCTCCGCCGCCTGCTCCGGCGGAGAAAGAGCACATGTTCGACAAAGTAGTGACGCCGAGCGACGTKGGGAAGCTGAACAGGCTGGTAATTCCCAAACAGCATGCGGAGAAGTACTTCCCGCTCGACTCGACGTCGAACGAGAAGGGACTTCTCCTGAATTTCGAAGACCGGAACGGGAAATTGTGGCGGTTCAGATACTCTTACTGGAACAGTAGCCAGAGCTATGTGATGACGAAAGGATGGAGCAGATTTGTGAAGGAGAAGAAACTTGATGCAGGTGACATTGTTTCTTTCCAACGCGGAGTTGGAGAAAYTTATAGACATAGATTATACATAGATTGGAGAAGAAGACCTGATAATCATCACCATCACCATCACAARCTCCATGGAGGACTTGATTTTCCCTCTTCGTCTTCCAATTTCATCACGCCCTTCTTCATTCCCAGTCAAGCGTCTTCACATTACTCTACGATTCGATACGGTGGCAGATTTTCCTCTCTGCCACCGCAATCGCAACCACAGCCACAGCCACAGCCACAACCGCAAATGATGATGTCACCAAGACATCATCATTATTATCCAATTCATCATGGTGGATATGGCGGCTATAATCATCCTCACAGTAATGAGTTGTTTTATCTGAGATCAACAACATCAACAACACTACCTTCTCCTCCTCCTCCTTCTTCTTCTTCAATGTCAATGGTTGATCATCATCATCATTACCATCAAGGATTATTGGCAAGACAACAACAACAAGAACAAGAACAAGAAAGGGGTTCACCAATGATCATAGATTCAGTACCAATTGCTCATCATTTTCATCATCATGGTGGTGGTGGTAATGGTAATAATGGTAGTAATAGTAATAGTAACAATAATAGTAACAATAATAATTCTGCAGGAAAAAGGTTAAGGCTATTTGGTGTGAACATGGAATGTGCTTCTTCTTCTTCAACAGCAACAACACCACAACAAGAAGATCATCATCAAGAACAAGAACAAGAAGATCCAAAATGCTTCACCTTGTTCTCTTCTACTAACTCAAGGGATGCAGAAGAATCTGGTGGTGGAGAAGATCAGAGAAGAAGAATAAGGGAGCAAGCTGCAAATTTTTTTGATTTGGACCCTTCTTTGCAATTCCGCCAACACTGA 1488 0.4409 MELMQESNKGYSQDLEEEEEEEEAPGEETTTAAGLHHHQHQDATTSNYFNHTTRMNQNQPQPQPQQLVDFMDLSLGTNINHHEGVNNFQGYSSSSAAAAATTTTTNNTNLQPPPPAPAEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGEXYRHRLYIDWRRRPDNHHHHHHKLHGGLDFPSSSSNFITPFFIPSQASSHYSTIRYGGRFSSLPPQSQPQPQPQPQPQMMMSPRHHHYYPIHHGGYGGYNHPHSNELFYLRSTTSTTLPSPPPPSSSSMSMVDHHHHYHQGLLARQQQQEQEQERGSPMIIDSVPIAHHFHHHGGGGNGNNGSNSNSNNNSNNNNSAGKRLRLFGVNMECASSSSTATTPQQEDHHQEQEQEDPKCFTLFSSTNSRDAEESGGGEDQRRRIREQAANFFDLDPSLQFRQH* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0563 495 MobiDBLite consensus disorder prediction 326 495 - -
Amo02g0563 495 Gene3D - 118 239 IPR015300 -
Amo02g0563 495 MobiDBLite consensus disorder prediction 464 481 - -
Amo02g0563 495 ProSiteProfiles B3 DNA-binding domain profile. 124 229 IPR003340 GO:0003677
Amo02g0563 495 Coils Coil 1 21 - -
Amo02g0563 495 MobiDBLite consensus disorder prediction 13 27 - -
Amo02g0563 495 CDD B3_DNA 122 211 IPR003340 GO:0003677
Amo02g0563 495 MobiDBLite consensus disorder prediction 423 437 - -
Amo02g0563 495 MobiDBLite consensus disorder prediction 269 309 - -
Amo02g0563 495 MobiDBLite consensus disorder prediction 392 415 - -
Amo02g0563 495 Pfam B3 DNA binding domain 124 228 IPR003340 GO:0003677
Amo02g0563 495 SMART B3_2 124 229 IPR003340 GO:0003677
Amo02g0563 495 MobiDBLite consensus disorder prediction 96 120 - -
Amo02g0563 495 MobiDBLite consensus disorder prediction 449 463 - -
Amo02g0563 495 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 89 457 IPR044800 GO:0003700
Amo02g0563 495 MobiDBLite consensus disorder prediction 357 371 - -
Amo02g0563 495 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 89 457 - -
Amo02g0563 495 MobiDBLite consensus disorder prediction 36 66 - -
Amo02g0563 495 MobiDBLite consensus disorder prediction 1 66 - -
Amo02g0563 495 SUPERFAMILY DNA-binding pseudobarrel domain 120 227 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0563 Amo-Chr2 7074314 7076969 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0563 118 431 RAV Transcription Factor Family AT2G46870 44.828 4.27e-71 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo02g0563 B3 2.5e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0563 - - gsj:114390989 338.576