Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0562 TTCAGCAATCTTTCTCATTTTCAATTTGAAAAAGAAAAAGAAGAAAAGAAGGAAGAAAAGAGAAGAAAAAAAAGAAAAGAAAAGAAAGAAAAAAAAAAAAAAGAAAAAAGAAGAAGAAGGGAAATAAAATTAAAAAGCTTTGCCCAGTTGAATCTGAGGCCTAGACAGGTGGAGGTGTGGTTTCAGAACAGAAGAGCAAGGACCAAATTGAAGCAAACTGAAGTTGATTGTGAATACTTGAAAAGATGTTGTGAGAATCTAACTGAAGAGAATAGGAGGTTGCAAAAGGAAGTGCAAGAGCTCAGAGCATTGAAGTTATCACCACAACTTTACATGCACATGAACCCTCCCACCACCCTTACAATGTGCCCTTCATGTGAGCGTGTAGCCGTCTCGTCCACCGGATCCTCCTCCTCGTCGGCCACCATGCAATCCGCCCCTGCCTCAGCTAGTCAAAACCAAATGGGCCCTAACGTTCAGCGGCCGGTTCCTGTCAATCCATGGGGAGCAATGTCACTTCAACGCCGGCCGATCGAGAGCCCGACTACCCGGCCATAA 558 0.4391 FSNLSHFQFEKEKEEKKEEKRRKKRKEKKEKKKKEKRRRREIKLKSFAQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVAVSSTGSSSSSATMQSAPASASQNQMGPNVQRPVPVNPWGAMSLQRRPIESPTTRP* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0562 185 Coils Coil 77 107 - -
Amo02g0562 185 Gene3D - 40 79 - -
Amo02g0562 185 ProSiteProfiles 'Homeobox' domain profile. 49 71 IPR001356 GO:0003677
Amo02g0562 185 MobiDBLite consensus disorder prediction 1 42 - -
Amo02g0562 185 SUPERFAMILY Homeodomain-like 48 80 IPR009057 -
Amo02g0562 185 SMART halz 71 114 IPR003106 GO:0006355|GO:0043565
Amo02g0562 185 CDD homeodomain 48 72 IPR001356 GO:0003677
Amo02g0562 185 MobiDBLite consensus disorder prediction 22 42 - -
Amo02g0562 185 Pfam Homeobox associated leucine zipper 71 105 IPR003106 GO:0006355|GO:0043565
Amo02g0562 185 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 43 174 - -
Amo02g0562 185 Coils Coil 6 45 - -
Amo02g0562 185 MobiDBLite consensus disorder prediction 7 21 - -
Amo02g0562 185 Pfam Homeodomain 48 69 IPR001356 GO:0003677
Amo02g0562 185 MobiDBLite consensus disorder prediction 131 160 - -
Amo02g0562 185 MobiDBLite consensus disorder prediction 131 185 - -
Amo02g0562 185 PANTHER - 43 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0562 Amo-Chr2 7033355 7037378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0562 49 177 Homeobox Transcription Factor Family AT3G60390 72.093 5.32e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo02g0562 HALZ 2.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0562 K09338 - pvy:116146403 211.075