Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0547 ATGGATGATTTAACCTCAGATTGTCAGCTGAATCAGGGCGAAGTGGATTATGAATTTGAATCTAACGAAGTTCCTGAGACGCTCGGGTGTAGATCAGAACTTTTTTGGGTGTATTTTTGCGATAAGTCTGAGTTGCTGTCGTTCGGAGTTCGGAGCACAAATAGGAAGGGAAACGAAATTAAGAATCAATTGATTACATGTAGCAAAGAGGGAAAATGGAAATCTAAAATATCTCCAACCGAGAAGACCAATCCGACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTTGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCTTCCTGTCCAAGTAAAGCAGAGATGCTCAAACAGCACAGGGAGCTAAGCATGTCCATTCGTCGTACAATAGAGAATAACGAGGAGGCCGGTATCAGACCAAACCGTCATATATGGGTTCCAATCTATCTGGATCACCACTTTTGGGCAGGGATGAGAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTTAACAAGTTTATTACTCGGAACAGTTCGCTTATTCAATTCGTCAAACAATACGATAATTACCTTGGAAGCAGGGAGCAAGTAGAGAGAGAATCAGATACTGAAGATTTTCATACGGTCATACCGTGTGCAACAAAATCCTCCATTGAAGATCAGTTTCAAGATGTGTACACTCATCAAAAGTTTAGGAAAGTTCAAGCACAATTCAGAGGAAAGGCGAATTGCATCACTAGACTAACGAATTCCGCTCTAGGCTATTCAGTATACGAAGTCGGAGAACAAGTTTTCAGCTCAATATTCAACAAGTTTGTGGTTACTTACGACTCAGTAGCAGTTGAGGTAAAATGCCAATGTTTATTATTCGAGTCGAGAGGGATACTGTGCCGTCACGCACTAAGCGTGTTAAGCTTTGAACGAGTAAGCCAAGTGTCACCGAGATATATACTGGAACGATGGAGCAAGAAGGTAAAGAGGCGACACACACACATCAAGAGCAGCCACGAGAGCCACTGTTGGAGCCAAGAAGCAAGAGGTTTGACCAATTGGTTTTTCGTTCGCAAAATATTTGCGAATTCGCATCCGAATCTGAGGAGCTGA 1140 0.4237 MDDLTSDCQLNQGEVDYEFESNEVPETLGCRSELFWVYFCDKSELLSFGVRSTNRKGNEIKNQLITCSKEGKWKSKISPTEKTNPTAGLNCPARIYIHTLKDVGAWIISKVVLDHSHPSCPSKAEMLKQHRELSMSIRRTIENNEEAGIRPNRHIWVPIYLDHHFWAGMRSTQRSESMHSFFNKFITRNSSLIQFVKQYDNYLGSREQVERESDTEDFHTVIPCATKSSIEDQFQDVYTHQKFRKVQAQFRGKANCITRLTNSALGYSVYEVGEQVFSSIFNKFVVTYDSVAVEVKCQCLLFESRGILCRHALSVLSFERVSQVSPRYILERWSKKVKRRHTHIKSSHESHCWSQEARGLTNWFFVRKIFANSHPNLRS* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0547 379 Pfam SWIM zinc finger 285 317 IPR007527 GO:0008270
Amo02g0547 379 ProSiteProfiles Zinc finger SWIM-type profile. 284 320 IPR007527 GO:0008270
Amo02g0547 379 PANTHER OS03G0843700 PROTEIN 54 132 - -
Amo02g0547 379 PANTHER OS03G0843700 PROTEIN 152 350 - -
Amo02g0547 379 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 54 132 IPR031052 GO:0006355
Amo02g0547 379 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 152 350 IPR031052 GO:0006355
Amo02g0547 379 SMART 26again6 295 322 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0547 Amo-Chr2 6759784 6762379 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo02g0547 SWIM 5.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0547 - - adu:110280503 365.54