Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0540 ATGGCTTCTTCCCATGCAATAATCCCAGACAAAGCAACACGTAAAAGGAAGATTGAGATCAAAAGAGTTGAACAAAGCAACAAGCGCCACGTCACCTTCTCCAAGAGAAAATTAGGGCTTTTCAACAAGGTCACCGAGCTCTCCATCCTTTGCCAGGCGGAAACCGCCTTGATCAAGAAGCAAGAGGAGAAAGTGGAAGTCCTAAGAGCACAATATGAGTCTTTGGAAGAAGCTCTCAAAGAAGAGAAGAAGCGACTCGAAGAGGCTGAGAATGCAAGAAAGAACCATAACAACAATGGCGGTTGCTTAGGGTTTTCATCGCAGTGGTGGGAGAATCCAATTGATGATATGGATTTGGAGGAGCTCGTTAAGTTCAAAGAATCCTTGGAACAGTTGAAGGTTAACCTATTTGCAACCGCTGAAAAGAAGATCATGTTCCAAGAATTGATGCCATCACCACTTGTTTCTTCTTCTTCAGTTATGGCTCCAATGCAAACTAGGGTTCCCAATTTCTCTTCAATATTGAACAATTATGGTGGATTCAACGCTAATAATGTTGGATTCAACGCGGTTCATCATCCACAACAGCAAGCACATTGGGATTATTGGAACAATAATGGAATTGCTAGCAGTAACAATCAGGATTCTTTAGGATCATGCGATTTTGGGAACAATGCTATAATTGCTGCCGCTAAAGATGTGGAAAGTAAAGAATATGAGTGA 723 0.4177 MASSHAIIPDKATRKRKIEIKRVEQSNKRHVTFSKRKLGLFNKVTELSILCQAETALIKKQEEKVEVLRAQYESLEEALKEEKKRLEEAENARKNHNNNGGCLGFSSQWWENPIDDMDLEELVKFKESLEQLKVNLFATAEKKIMFQELMPSPLVSSSSVMAPMQTRVPNFSSILNNYGGFNANNVGFNAVHHPQQQAHWDYWNNNGIASSNNQDSLGSCDFGNNAIIAAAKDVESKEYE* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0540 240 Gene3D - 26 100 IPR036879 GO:0003677|GO:0046983
Amo02g0540 240 PANTHER MADS BOX PROTEIN 74 146 - -
Amo02g0540 240 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Amo02g0540 240 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Amo02g0540 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 58 IPR002100 GO:0003677|GO:0046983
Amo02g0540 240 CDD MADS 14 58 - -
Amo02g0540 240 ProSiteProfiles MADS-box domain profile. 13 58 IPR002100 GO:0003677|GO:0046983
Amo02g0540 240 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 10 58 - -
Amo02g0540 240 PANTHER MADS BOX PROTEIN 10 58 - -
Amo02g0540 240 SUPERFAMILY SRF-like 14 61 IPR036879 GO:0003677|GO:0046983
Amo02g0540 240 Coils Coil 51 99 - -
Amo02g0540 240 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 74 146 - -
Amo02g0540 240 SMART madsneu2 13 71 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0540 Amo-Chr2 6619348 6620510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0540 11 159 Type I MADS-box Gene Family AT5G60440 27.368 3.28e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo02g0540 SRF-TF 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0540 - - ahf:112729126 353.214