Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0539 ATGAAAACGAGTCCCGACCGTACAATTAAGCTCCTCTGCAACTATGGCGGCAAGATCCTCCCACGTGCTACCGACGACTTGTTGGTAAAGCTAGGAGAGTTGTGCGGTTCGTCTGTGACGTTACGGTGTCAATTGCAGAACGGAGACTTAGAAACCTTGATCTCCGTCACCAACGACGAAGATCTGACGTACATAATCGAAGAATATGACCGCGCTTCGTCGAACTACCTCATCCGTTGA 240 0.4958 MKTSPDRTIKLLCNYGGKILPRATDDLLVKLGELCGSSVTLRCQLQNGDLETLISVTNDEDLTYIIEEYDRASSNYLIR* 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0539 79 PANTHER OS05G0427100 PROTEIN-RELATED 27 76 - -
Amo02g0539 79 SUPERFAMILY CAD & PB1 domains 24 76 - -
Amo02g0539 79 PANTHER PB1 DOMAIN PROTEIN 5 28 - -
Amo02g0539 79 Gene3D - 20 79 - -
Amo02g0539 79 PANTHER OS05G0427100 PROTEIN-RELATED 5 28 - -
Amo02g0539 79 PANTHER PB1 DOMAIN PROTEIN 27 76 - -
Amo02g0539 79 Pfam PB1 domain 25 75 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0539 Amo-Chr2 6614361 6614760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0539 9 74 MAP Kinase Kinase Kinase AT1G04700 36.364 1.06e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0539 - - aip:107611558 114.775