Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0517 ATGGCTTCTCTACTCCCTCCAACTCCAACTGTCACTGCCACATTCCAACAGCATTATTGTTATTATTATAATTTGCATAACAACCAAATAGCGGCAATCTGCTGCTTCTCGCCTGCTCACAAAAAACTACTCCCCATCACTTCAAAGAGGAAGAGTAGGAGGGGCCTCATCAGGTGCAATGCTTTCTTTGATGACGTGGCAACCGGTTTGTTGGAGTTGGAGAATGCTCCTTACTTTCAGGGCTTATCGGAGACGCAGCGGTGGTGGATAGTGGTTTTGGCGGCCTTGCTTGGATTTATTTCACTGCAAGGCCCGGGGTTCTCTCGGCGCCATCGATGCATACCTTCTGGCCCCTCTTCAGCTCGCGCTGGACAAAAAGCTCGGCGAGGGTCCTTCGGTGTTGTGTACTCTGGTGTACTCCTCCCAAAGAATCTCAATGACTCGCCGGCGGACCAGAAGAGGCCACGACGGCCTCCGCCTCGGTCTGCTCTTGTTCCCCAATCTCAATCTAAGGACAAAGTCATTCTTAAAAAGGTGAAGGTTGAGATCAAAGGGGCCCGAGAATTCGGTGATTTTGAGGAGTGGTTTAACTACAGGCTCGCTAGAGCAGCACCCGAAACATGTGCCGAATTCCTTGGAAGTTTTGTAGCTGATAAGACAAATTCACAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGTCCTGCAACTTTACAGGGAGATCTCACTCTTGGTGATTACATGAAAGATCGCAACTTCCCCTCAAACTTAGAATCCCTCATGTTTGGACGAGTCTTGCGAGGCGCAGACTCTTCTAAGAGAAATGCCTTGATCATCAAGCAAGTAATGCGCCAGATTATTACCTCTCTTAAGAAAATTCACGACACGGGAATTGTTCACAGGGATATAAAGCCAGACAACTTGGTAGTTACTAAGCGTGGTCGGATTAAACTCATTGATTTTGGTGCCGCAACTGACCTACGGATTGGAAAGAATTATGTTCCCAACAAGACACTACTGGATCCTTACTTCTGTCCCCCGGAATTATATGTACTTCCAGAAGAAACGCCGAGTCCTCCACCAGAGCCAATTGCAGCTCTCCTTTCGCCAATCTTGTGGCAGTTAAACAGTCCTGATCTGTTTGATATGTATTCGGCTGGGATTGTGCTTCTGAATTTCAATCTGGAAATAAAAAGCTGCGGATATGATTTGAAAAAATGGAGAGACTATACTCGCCTCAGGCCTGATTTTCAAATTCTGGATAGTGAATCTGGTAGAGGGTGGGACTTAGCTACAAAGCTTATATCGGAGAGAGGTTACCTGAGAAGAGGACGGTTATCTGCTGCTGCTGCTTTAAGACATCCTTATTTTCTTCTGGGCGGGGATCAGGCAGCTGCAGTCCTCTCGAAATTAAGCTTAGACAGAAAGTGA 1440 0.4681 MASLLPPTPTVTATFQQHYCYYYNLHNNQIAAICCFSPAHKKLLPITSKRKSRRGLIRCNAFFDDVATGLLELENAPYFQGLSETQRWWIVVLAALLGFISLQGPGFSRRHRCIPSGPSSARAGQKARRGSFGVVYSGVLLPKNLNDSPADQKRPRRPPPRSALVPQSQSKDKVILKKVKVEIKGAREFGDFEEWFNYRLARAAPETCAEFLGSFVADKTNSQFTKGGKWLVWKFEGPATLQGDLTLGDYMKDRNFPSNLESLMFGRVLRGADSSKRNALIIKQVMRQIITSLKKIHDTGIVHRDIKPDNLVVTKRGRIKLIDFGAATDLRIGKNYVPNKTLLDPYFCPPELYVLPEETPSPPPEPIAALLSPILWQLNSPDLFDMYSAGIVLLNFNLEIKSCGYDLKKWRDYTRLRPDFQILDSESGRGWDLATKLISERGYLRRGRLSAAAALRHPYFLLGGDQAAAVLSKLSLDRK* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0517 479 SUPERFAMILY Protein kinase-like (PK-like) 129 461 IPR011009 -
Amo02g0517 479 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 122 476 - -
Amo02g0517 479 Pfam Protein kinase domain 281 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo02g0517 479 SMART serkin_6 121 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo02g0517 479 MobiDBLite consensus disorder prediction 143 169 - -
Amo02g0517 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 301 313 IPR008271 GO:0004672|GO:0006468
Amo02g0517 479 ProSiteProfiles Protein kinase domain profile. 121 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo02g0517 479 Gene3D Phosphorylase Kinase; domain 1 104 235 - -
Amo02g0517 479 Gene3D Transferase(Phosphotransferase) domain 1 270 462 - -
Amo02g0517 479 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 122 476 IPR044803 GO:0004674|GO:0009579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0517 Amo-Chr2 6401338 6404113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0517 215 389 AGC Kinase Gene Family AT5G04510 27.419 1.23e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Amo02g0517 Pkinase 9e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0517 - - gmx:100788727 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0436 12 7143462 7145787 Amo02g0517 02 6401338 6404113 hybridization
Amo04g2128 04 91403430 91405032 Amo02g0517 02 6401338 6404113 PCT