Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0500 ATGTTGGACTACGAATGGGGGAACCCATCCATAATGCTCACCGGGAACGAAGACGGCGCAGCGCCACCGCCCTCCGACCAAACTCACCGCCAAATCTTCGACCACTACGCCTCTCACGCCCTACTGCCCGACCACTTCCTGCATGGGCCCGGCGCCACAACCACAGCTCACAATAACGCAAACAACCCCACCACCACCATCGACCTCTCTCATCATCACTTCAGCCCGCAACAAACCCATCACCACGTCCCCCACAGCTTCTTCGACCCACGGGCCTTCCATGCGGCCTCCTCCACCCACTACCCACCGCCACAGCCCCAACCCCCGCCTCCCCCATCCATGCTTTCCCTTGACCCGTTACCCCACCACGCCCACTGCGGGCCCGGCCATGGGCTCATGCTGGTGCCGAAATCTGAGGATGTCGGTCGGCCCATGGACTTCGTGGGCTCTCGAATTGGGCTGAACCTGGGAGGGCGCACCTACTTCTCGTCCTCGGAGGATGACTTCGTCAGCAGGCTGTACCGCAGGTCTCGGCCCGCCGAACCGGGGTCGACGGCGTCCTCTAACTCCCCTCGGTGCCAGGCGGAGGGGTGCAATGCTGATCTGTCTCAGGCGAAGCACTACCACCGCCGCCACAAAGTGTGCGAGTTCCACTCTAAGGCCTCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTYTGCCAACAATGCAGCAGGTTCCATCTTCTCTCTGAGTTCGATAACGGAAAACGTAGCTGCAGGAAGAGACTGGCAGATCATAATCGTCGCAGAAGAAAAACTCAGCAGCCACCAGCACAAGACATCCACAAATCTCAGCCTGCTACTAATTTGGATAACGTTGCAAGGTCCCCACCGGAGTCCGGAGCTCAGTCATCTTCGTCCGTAACGGTGGCCGTGTCTCCACCTGATTACTTCCGGCAAAGGCCGTACCAAACCGGAAGCCCATCAACGACTTCAAGTTCACTGTTTTTCTCAAGCGGGCAGTAG 1008 0.5933 MLDYEWGNPSIMLTGNEDGAAPPPSDQTHRQIFDHYASHALLPDHFLHGPGATTTAHNNANNPTTTIDLSHHHFSPQQTHHHVPHSFFDPRAFHAASSTHYPPPQPQPPPPPSMLSLDPLPHHAHCGPGHGLMLVPKSEDVGRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAEPGSTASSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPPAQDIHKSQPATNLDNVARSPPESGAQSSSSVTVAVSPPDYFRQRPYQTGSPSTTSSSLFFSSGQ* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0500 335 ProSiteProfiles Zinc finger SBP-type profile. 190 267 IPR004333 GO:0003677
Amo02g0500 335 SUPERFAMILY SBT domain 191 269 IPR036893 GO:0003677|GO:0005634
Amo02g0500 335 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 82 318 - -
Amo02g0500 335 MobiDBLite consensus disorder prediction 272 307 - -
Amo02g0500 335 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 82 318 IPR044817 GO:0003677
Amo02g0500 335 MobiDBLite consensus disorder prediction 256 335 - -
Amo02g0500 335 MobiDBLite consensus disorder prediction 314 335 - -
Amo02g0500 335 Gene3D - 183 254 IPR036893 GO:0003677|GO:0005634
Amo02g0500 335 Pfam SBP domain 193 266 IPR004333 GO:0003677
Amo02g0500 335 MobiDBLite consensus disorder prediction 1 26 - -
Amo02g0500 335 MobiDBLite consensus disorder prediction 95 122 - -
Amo02g0500 335 MobiDBLite consensus disorder prediction 101 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0500 Amo-Chr2 6237299 6240323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0500 1 240 SBP-box Gene Family AT1G02065 46.768 2.09e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Amo02g0500 SBP 4.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0500 - - adu:107473166 542.347