Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0491 ATGCAAGCACGACTTGGGGAATGGAAAGAGCTGTGGAACCATCATCATCATCATCACCAACCGGAACACGACCTCATTCCTCAAGCAAGGCCTCTCTTCCACCAAGATCTTTACAGCTCTGCGGCTACTCTAGGAGTGGGTCCAACTACCGTGTCCGACGATCAGTCACCCTTGATATCGGCCTTCCTGGTGACAGCATCGGCCGTGGGGAGCGGAGCAGCAAGTGGAGCAGGAAGTGGAGCAAGTGGGATTAGCTGCCAGGACTGCGGAAACCAGGTGAAGAAGGATTGCCCTCACATGCGGTGCAGGACATGCTGCAAGAGCCGTGGCTTCGATTGCCAAACCCATGTGAAGAGCACTTGGATTCCCGCTTCCAAGCGCCGCGAGAGGCAACAGTAA 399 0.5564 MQARLGEWKELWNHHHHHHQPEHDLIPQARPLFHQDLYSSAATLGVGPTTVSDDQSPLISAFLVTASAVGSGAASGAGSGASGISCQDCGNQVKKDCPHMRCRTCCKSRGFDCQTHVKSTWIPASKRRERQQ* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0491 132 Pfam Domain of unknown function (DUF702) 83 132 - -
Amo02g0491 132 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 85 127 IPR006510 -
Amo02g0491 132 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 10 132 IPR007818 GO:0003700|GO:0006355
Amo02g0491 132 PANTHER TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED 10 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0491 Amo-Chr2 6065764 6066579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0491 10 132 C2H2 Transcription Factor Family AT3G51060 49.254 4.91e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Amo02g0491 DUF702 1.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0491 - - aip:107636969 199.519