Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0474 ATGACTATTGTAATGATAATCCTCATTCTAATAATCCTGCTATTCCTGATTCGGGTTATGCTATTCAAAACAGGATTAATCCACAGCACAAAGAAATTGCAACAAACGTTACAAGAAATTTTCTACGTTCATCAGTACCTTAAAGTTCCCGAACTCAACGAGAGCATGCAACCGAACCCACTTTACAGAAAAGTCTTTCTCTATTTGCATTCTCTTCCTTCAATTGAAGATTCTGATTTCACGAACCTCGTTACCGGAACCAACCAAAACGATATCGTTTTATGCCTCGACGCAAATCAACTCATAGAGGATCATTTTCTTGGTGCAACTCTCTACTGGTTCAACCAGAAAACCGAACCGAACCGGAATAATGAGAACCGGACCGGTTCGTTTTTGCTCAAGATCAGAAAAAACGATAAGAGGAGAATTCTCGGGGCTTATCTCCGCCACATCCACGACGTCGCCGGCGACATGGAGAGCAACGGGAAACGCGAATTGAGGCTTTTCGTGAACGCCGGAGACGGCGAGGGAGGAGTTAGGTGGAGATCGGTACCGTTCACGCATCCTTCGACGTTCGAAACGATCGCGATGGGGGAAGATCTGAGGAGCAAGGTGAAATCAGATCTGGAATTGTTCCTCCGAGGGAAAAAGTATTACCGGAAGCTCGGCCGAGCTTGGAGGCGGAGCTTCTTGCTGTACGGTCCCTCCGGCACCGGAAAATCGAGCTTCGTCGCTGCTATGGCGAATTTCCTTGGATACGACGTTTACGACGTCGATCTCGAGAATGTTCGCGGTGGCGATTCAGATCTGAAGCTCCTCCTCCTGGAGACGACGCCGAAATCGATCGTCGTCGTGGAAGATCTCGACAAGTTTGTTGTCGCCGCGACGACGGAATCATCGTTGCCGGCGGCGAGCGCCACGGGGATACAGATGCTGAATATAATGGACGGGATTCTTAGCGCGTGTTGTGGAGAAGAGCGCGTGATGGTGTTCACGATGAACAGTAAGGATGGGGTCGACCCGGATCTGCTTCGTCCGGGTCGGGTCGACGTTCACATTCATTTTCCCACGTGCGATTTCACATCGTTCAAGGAACTCGCGAGTAGCCACTTGGGTGTGAAGGAGCACAAACTGTTCCCGCGCGTGGAGGAGATTTTGGCGCGTGGGGTGAGTCTTAGCCCGGCCGAGGTCGGCGAGTTAATGATCGCGAACCGTGGGTCACCGAGTCGGGCCATAAAATCAGTAATCGGAGCGCTAAGGCCGGATGGCGGCGATGGGATCGGACGGCGGGAAAGCGCCGATGATGACTGTGATGACGTTGACGGCGGAGATGGGTGCAATGCTGTTAAGGATTTTCGAAAATTGTATGGTTTGTTCAAATTAAGAAATGGGAAAAGATCTCGACCGTCAAATAATACATTGGTCCATGATTAG 1434 0.5028 MTIVMIILILIILLFLIRVMLFKTGLIHSTKKLQQTLQEIFYVHQYLKVPELNESMQPNPLYRKVFLYLHSLPSIEDSDFTNLVTGTNQNDIVLCLDANQLIEDHFLGATLYWFNQKTEPNRNNENRTGSFLLKIRKNDKRRILGAYLRHIHDVAGDMESNGKRELRLFVNAGDGEGGVRWRSVPFTHPSTFETIAMGEDLRSKVKSDLELFLRGKKYYRKLGRAWRRSFLLYGPSGTGKSSFVAAMANFLGYDVYDVDLENVRGGDSDLKLLLLETTPKSIVVVEDLDKFVVAATTESSLPAASATGIQMLNIMDGILSACCGEERVMVFTMNSKDGVDPDLLRPGRVDVHIHFPTCDFTSFKELASSHLGVKEHKLFPRVEEILARGVSLSPAEVGELMIANRGSPSRAIKSVIGALRPDGGDGIGRRESADDDCDDVDGGDGCNAVKDFRKLYGLFKLRNGKRSRPSNNTLVHD* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0474 477 Pfam ATPase family associated with various cellular activities (AAA) 231 356 IPR003959 GO:0005524|GO:0016887
Amo02g0474 477 PANTHER BCS1 AAA-TYPE ATPASE 5 433 - -
Amo02g0474 477 PANTHER BNAC04G00800D PROTEIN 5 433 - -
Amo02g0474 477 SMART AAA_5 226 359 IPR003593 -
Amo02g0474 477 Pfam Domain associated at C-terminal with AAA 31 114 IPR025753 -
Amo02g0474 477 CDD AAA 227 356 - -
Amo02g0474 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 410 IPR027417 -
Amo02g0474 477 Gene3D - 179 357 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0474 Amo-Chr2 5765125 5767316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0474 222 406 Calmodulin-binding Proteins AT3G56690 27.179 1.42e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0474 - K08900 gmx:100787809 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0132 12 1955073 1957288 Amo02g0474 02 5765125 5767316 hybridization
Amo16g1305 16 22453846 22456091 Amo02g0474 02 5765125 5767316 PCT
Amo02g0474 02 5765125 5767316 Amo16g1305 16 22453846 22456091 PCT