Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0454 ATGTCTAAGTTAAAACAAGCATTCACCCAACTCACTCATTCTTCCACTAACAACAACAAGAAAAAGAAGCTCTTCTTGTCTCTCTTCGCCACCCTCCTCCTTGTCGCCTCCGTCGCCGCCATAGTCGCCGGCGTAAACTCCCACAAAAACAACACCTCCTCTTCCTCCTCCTCTCTCGCACTCTCCCACCACTCCCACACCATCATCAAAAGCGCTTGCAGCTCCACATTCTACCAAGACCTCTGTTTCTCCGCCGTCTCCTCCGAGCCTGGCGTGACAAACAAGGTCACTTCTCACAAAGATGTCATTGAATTGTCCCTCAACGTTACCTGTAGGACCGTCGAGCACAACTTCTTTGTTATCAAGAAGATTCTCGAGGAGCGGGAGAAGATCCTCACCCACAGGGAGAGGATCGCCCTCCACGACTGCCTYGAGACCATTGATGAGTCCCTTGACGAGCTCCATCAGGCCTACGAGGACATCAAGCTCTATCCTAACTCTAACAAGAAGACTCTCTACCAGCACGCCGATGATCTCAACACTCTTATCAGTGCCGCCATAACCAACCAGGTGACTTGCTTGGACGGTTTCTCGCACGACGCGGCGGACAAGAAAGTAAGGAAGGCTCTAGAAGAAGGTCAGGTACACGTGGAGCACATGTGCAGCAACGCATTGGCTATGGCGAAGAACATGACCGACACCGACATCGCAAACTACGAGCAGAAAATGATGACGACGGCGACAGCGAACGGAGGAAGGAAGTTGATGATGATGGAGGAAGAAGAAGACGAGAAGGGAGTAAAGTGGCCGCAGTGGATGTCGGTTGGTGACAGGAGGCTGTTGCAGGCGGCGACGGTGGAGGCGGACGTTGTGGTGGCGGCGGACGGGAGCGGGAACTTCAAGACGGTGTCGGAGGCGGTGAAGGCGGCGCCGGAGAAGAGTAGCAAGAGGTATGTGATTAAGATAAAAGCTGGTGTATACAGAGAGAATGTTGAGGTGCCGAAGAAGAAGACGAATATAATGTTCTTGGGAGATGGAAGAACCAACACCATTATCACCGGAAGTAGAAACGTTAAAGATGGCGACACCACCTTCAACTCCGCCACCGTCGCCGTTGTGGGAGCAAACTTTCTTGCAAGAGACATAACCTTCCAAAACACAGCCGGAGCAGCAAAGCACCAAGCGGTGGCACTTCGAGTCGGTGGCGACCTCTCAGCCTTCTACAACTGCGATATCCTCGCCTACCAAGACACCTTATATGTCCACAACAACCGTCAATTCTTTGTCAATTGCCTCATCGTGGGCACCGTCGACTTTATCTTTGGTAATTCAGCCGCAGTTTTTCAAAACTGCGACATCCATGCCCGGCGCCCTGACCCTGGTCAGAAGAACATGGTCACGGCGCAGGGCAGGGTTGACCCTAACCAAAACACCGGAATTGTGATCCAAAAATGTAGGATTGGTGCCACCACGGATTTGGAGCCTGTGAAGAAGAGTTTCCCTACCTACCTTGGTAGGCCATGGAAGGAGTACTCTAGAACCGTGATCATGCAAAGCACCATAAGCGATGTRATTCAACCTGTTGGATGGCATGAGTGGAATGGAGACTTTGCAYTRRAYACTYTGGTTTATAGAGAGTACCAAAATACTGGGCCTGGKGCTGGTACTTCTGCTAGGGTTAMCTGGAAGGGCTATAAGGTAATTACAAATGCTGCTGAGGCCCAGGCTTTTACAGCTGGGGCCTTCATTGGGGGTTCTAATTGGTTGGGCTCAACAGGCTTCCCTTTCTCTCTTGGGTTATAA 1803 0.5114 MSKLKQAFTQLTHSSTNNNKKKKLFLSLFATLLLVASVAAIVAGVNSHKNNTSSSSSSLALSHHSHTIIKSACSSTFYQDLCFSAVSSEPGVTNKVTSHKDVIELSLNVTCRTVEHNFFVIKKILEEREKILTHRERIALHDCLETIDESLDELHQAYEDIKLYPNSNKKTLYQHADDLNTLISAAITNQVTCLDGFSHDAADKKVRKALEEGQVHVEHMCSNALAMAKNMTDTDIANYEQKMMTTATANGGRKLMMMEEEEDEKGVKWPQWMSVGDRRLLQAATVEADVVVAADGSGNFKTVSEAVKAAPEKSSKRYVIKIKAGVYRENVEVPKKKTNIMFLGDGRTNTIITGSRNVKDGDTTFNSATVAVVGANFLARDITFQNTAGAAKHQAVALRVGGDLSAFYNCDILAYQDTLYVHNNRQFFVNCLIVGTVDFIFGNSAAVFQNCDIHARRPDPGQKNMVTAQGRVDPNQNTGIVIQKCRIGATTDLEPVKKSFPTYLGRPWKEYSRTVIMQSTISDVIQPVGWHEWNGDFALBTLVYREYQNTGPGAGTSARVXWKGYKVITNAAEAQAFTAGAFIGGSNWLGSTGFPFSLGL* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0454 600 Pfam Plant invertase/pectin methylesterase inhibitor 68 227 IPR006501 GO:0004857
Amo02g0454 600 PANTHER PECTINESTERASE 19 599 - -
Amo02g0454 600 PANTHER PECTINESTERASE 19 599 - -
Amo02g0454 600 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 232 IPR035513 -
Amo02g0454 600 Pfam Pectinesterase 289 585 IPR000070 GO:0030599|GO:0042545
Amo02g0454 600 SMART PMEI_2 64 227 IPR006501 GO:0004857
Amo02g0454 600 CDD PMEI-like_3 71 232 - -
Amo02g0454 600 ProSitePatterns Pectinesterase signature 2. 433 442 IPR033131 -
Amo02g0454 600 Gene3D - 283 600 IPR012334 -
Amo02g0454 600 SUPERFAMILY Pectin lyase-like 284 599 IPR011050 -
Amo02g0454 600 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 232 IPR035513 -
Amo02g0454 600 TIGRFAM PME_inhib: pectinesterase inhibitor domain 56 231 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0454 Amo-Chr2 5589159 5596032 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0454 14 600 Carbohydrate Esterase AT3G14310 68.552 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0454 K01051 - pvu:PHAVU_010G123100g 879.782