Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0436 ATGTCGGAAGGTGCTGAAATCGATGAGCGTGTGGACTTTGATGATGAGAATTACATGGAAGAGATGGATGACGATGATGTCGAGGAACAATCAGATGGCGATGATGAGGATGATGATGATGATGGGGATGGCGATGATAATAATAACAACGATAATGCGAACGATAATGATGACGACGATGACGACGACGACGATGATGGAGTGGATGGACAAGGTGAGGAAAATGCTGAAGAACAGGAATATGAAGACTCGGGGGAGGAGGCTGGTGGGAAAGACCAAATGGCCAAAGGGGATAGAASTGGCATTACCACTGGGTCCGAAGGAGATGGGCTGAAACCACCYTTCATCGAYGAAGAAGAGAAACAGAAGCATGATGAACTTCTTGCAMTGCCTCCTCATGGTTCTGAAGTTTTTATTGGTGGACTTCCTCGGGATGTTTGCGAGGATGATTTGAGGGAATTGTGCGAATCGTTGGGTGAAATTTTTGAGGTGCGATTGATGAAAGACAGGGACAGTGGAGAAGGTAAGGGGTATGCTTTTGTGGCTTTCAAAACAAAAGAGGTTGCACAAAATGCCATAGAAGAGATACACAATAAGAAATATAAGGGTAAAACTTTGAGGTGTTCACTATCTGAGACAAAACAAAGATTGTTCATTGGTAATGTTCCGAAAACTTGGACTGAGGAGGARTTTAGGAGAGTAGTCGAGGGTGTTGGTCCTGGAGTTGAAGTCATTGAGCTCTTTAAGGACGTTCAAAATCCTAGCAGGAACCGTGGGTTTGCGTTCGTGTCGTATTACAATAATGCATGCGCAGATTATTCAAGGCAGAAAATGTCAACTGCAGGTTTTAAGCTGGAAGGTAATACCCCAACTGTCACATGGGCGGATCCAAAGAATTCAACTGATCATTCAGCTGCTTCCCAGGTTAAAGCTCTTTATGTGAAGAACATACCTGAAAATACTACTACCGAACAACTCAAGGAACTGTTTTCTCGTCATGGAGAAGTAACAAAAGTGGTCATGCCACCTAGCAAGGCCGGAGGGAAGCGTGATTTTGGTTTCATCCATTATGCAGAGAGGTCAAGTGCATTAAAGGCCGTAAAAGACTCAGAGAAATACGAAGTTGATGGCCAATTGCTYGAGGTTGTTCTTGCSAAACCTCAAGCTGAGAAAAAACCCGATATGGGTTACGGCTATAATCCTGGACTTGCACATCCTGGGTTTGGTGGTGCCTTTGCTGGAAATCCGTATGGCTCGGCAATAGGTGCTGCAGGAGCTGGATATGGTGTTGCTCCTAGCTTTCAACAGCCGCAGCAACCAGTGATATATGGTAGGGGTCCAATGCCGGCTGGAATGCAGATGGTTCCGATGGTATTGCCAGATGGTAGAATCGGCTATGTCTTTCAACAGCCTGGTGTACAGATGCCAGCACCTCGTCCACGCGGGCCTGGTAGGGGCAACAGTTCAGGGGGTCCTGCAGGAAGAGGGGGAGGCAGCGGCAATGAGGGCAGCGGTAAACGCGGTCGGAGGTATCAACCGTACTAG 1545 0.466 MSEGAEIDERVDFDDENYMEEMDDDDVEEQSDGDDEDDDDDGDGDDNNNNDNANDNDDDDDDDDDDGVDGQGEENAEEQEYEDSGEEAGGKDQMAKGDRXGITTGSEGDGLKPPFIDEEEKQKHDELLAXPPHGSEVFIGGLPRDVCEDDLRELCESLGEIFEVRLMKDRDSGEGKGYAFVAFKTKEVAQNAIEEIHNKKYKGKTLRCSLSETKQRLFIGNVPKTWTEEEFRRVVEGVGPGVEVIELFKDVQNPSRNRGFAFVSYYNNACADYSRQKMSTAGFKLEGNTPTVTWADPKNSTDHSAASQVKALYVKNIPENTTTEQLKELFSRHGEVTKVVMPPSKAGGKRDFGFIHYAERSSALKAVKDSEKYEVDGQLLEVVLAKPQAEKKPDMGYGYNPGLAHPGFGGAFAGNPYGSAIGAAGAGYGVAPSFQQPQQPVIYGRGPMPAGMQMVPMVLPDGRIGYVFQQPGVQMPAPRPRGPGRGNSSGGPAGRGGGSGNEGSGKRGRRYQPY* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0436 514 MobiDBLite consensus disorder prediction 1 126 - -
Amo02g0436 514 SMART rrm1_1 311 383 IPR000504 GO:0003723
Amo02g0436 514 SMART rrm1_1 136 209 IPR000504 GO:0003723
Amo02g0436 514 SMART rrm1_1 216 293 IPR000504 GO:0003723
Amo02g0436 514 MobiDBLite consensus disorder prediction 469 514 - -
Amo02g0436 514 MobiDBLite consensus disorder prediction 112 126 - -
Amo02g0436 514 SMART rrm2_1 136 209 IPR003954 GO:0003676
Amo02g0436 514 SMART rrm2_1 311 383 IPR003954 GO:0003676
Amo02g0436 514 Gene3D - 297 421 IPR012677 -
Amo02g0436 514 Gene3D - 116 215 IPR012677 -
Amo02g0436 514 Gene3D - 216 296 IPR012677 -
Amo02g0436 514 CDD RRM_SF 137 209 - -
Amo02g0436 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 213 IPR000504 GO:0003723
Amo02g0436 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 387 IPR000504 GO:0003723
Amo02g0436 514 CDD RRM3_hnRNPR_like 309 387 - -
Amo02g0436 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 297 IPR000504 GO:0003723
Amo02g0436 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 207 IPR000504 GO:0003723
Amo02g0436 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 379 IPR000504 GO:0003723
Amo02g0436 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 280 IPR000504 GO:0003723
Amo02g0436 514 SUPERFAMILY RNA-binding domain, RBD 132 300 IPR035979 GO:0003676
Amo02g0436 514 MobiDBLite consensus disorder prediction 8 85 - -
Amo02g0436 514 SUPERFAMILY RNA-binding domain, RBD 306 406 IPR035979 GO:0003676
Amo02g0436 514 PANTHER GEO13361P1-RELATED 46 512 - -
Amo02g0436 514 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 46 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0436 Amo-Chr2 5399458 5404033 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0436 137 444 Eukaryotic Initiation Factors Gene Family AT1G71770 25.714 3.89e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0436 K13161 - gmx:100800974 647.506