Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0427 AGGGCGCCGGCTCGCACCTGCGTGGGGAAGTATGAGCTTGGAAAGACTATCGGAGAAGGAAGCTTCGCGAAGGTTAAGTTCGCCAAGAACGTTGAGAATGGAGATCATGTTGCCATCAAGATCCTTGACAAGTCCCATGTCCTCAAACATAAGATGATTGAGCAGCTGAAGAAGGAAATCTCGGCGATGAAGCTGATCAACCATCCAAACGTTGTAAGAATATTTGAGGTGATGGCAAGCAAAACAAAGATTTACATTGTTCTAGAGTTGGTTAATGGAGGAGAACTATTTGACAAAATTGCGAGATATGGAAGACTAAAAGAGGATGAGGCAAGAAGCTATTTTCAACAACTAATCAATGCAGTTGATTATTGCCATAGTAGAGGAGTTTATCATAGAGATTTGAAGCCTGAGAATCTTCTTCTGGACTCAAATGGTGTTCTTAAAGTTTCGGATTTTGGATTGAGTACTTACGCGCAGCGAGAGGATGAACTTCTTCGCACGGCATGTGGAACCCCGAATTATGTTGCTCCCGAGGTGATCAATGATAGAGGCTATGTTGGATCTGCATCTGATATATGGTCTTGTGGAGTCATTCTCTTTGTACTCATGGCTGGATACTTGCCTTTTGATGAACCAAATCAAATGGCACTTTACAAGAAAATTGAAAAGGCTCAATTCACATGTCCATCTTGGTTTTCGCCCGAGGCAAAAAAAATTCTGAAGCGAATTCTGGATCCAAATCCTCTCGCAAGGATAAAAATTCCTGAACTCTTGAGAGATGAATGGTTTAGAAAAGGATACAAGCCACCAAGTTTTACAGAGGAAGAAGATGTAAATGTAGATGATGTAGCTGCTGCTTTTGATGATTCTAAGGAAAATCTAGTGACAGAGAGAAAAGAGAAACCGGTTTCAATGAATGCTTTTGAACTCATTTCAAGATCTCAAAGCTTTAACCTTGACAGCTTATTTGAGCAGCAAACAGGAGTTGTAAAGAGAGAAACACATTTTACTTCACAACATCCTCCGAACGAAATCATGTCGAAAATTGAGGAAGCTGCCAAGCCTCTTGGATTCAATGTTCGCAAGCGAAATTATAAGATGAGGCTGCAAGGTGATAAGAGTGGAAGGAAAGGTCATCTTTCGGTGGCTACCGAGGTTTTCGAAGTGGCGCCCTCCTTGCACGTGGTGGAGCTGCGGAAAACCGGTGGCGATACACTGGAGTTTCACAAGTTCTACAAAAACTTCTCTTCAGGGTTGCAAGACATAGTTTGGCATACTGAAGAAAAAATTTGA 1296 0.419 RAPARTCVGKYELGKTIGEGSFAKVKFAKNVENGDHVAIKILDKSHVLKHKMIEQLKKEISAMKLINHPNVVRIFEVMASKTKIYIVLELVNGGELFDKIARYGRLKEDEARSYFQQLINAVDYCHSRGVYHRDLKPENLLLDSNGVLKVSDFGLSTYAQREDELLRTACGTPNYVAPEVINDRGYVGSASDIWSCGVILFVLMAGYLPFDEPNQMALYKKIEKAQFTCPSWFSPEAKKILKRILDPNPLARIKIPELLRDEWFRKGYKPPSFTEEEDVNVDDVAAAFDDSKENLVTERKEKPVSMNAFELISRSQSFNLDSLFEQQTGVVKRETHFTSQHPPNEIMSKIEEAAKPLGFNVRKRNYKMRLQGDKSGRKGHLSVATEVFEVAPSLHVVELRKTGGDTLEFHKFYKNFSSGLQDIVWHTEEKI* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0427 431 SMART serkin_6 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo02g0427 431 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Amo02g0427 431 Gene3D Phosphorylase Kinase; domain 1 2 90 - -
Amo02g0427 431 PANTHER - 5 428 - -
Amo02g0427 431 ProSiteProfiles Protein kinase domain profile. 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo02g0427 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Amo02g0427 431 Gene3D Kinase associated domain 1, KA1 300 426 - -
Amo02g0427 431 Pfam Protein kinase domain 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo02g0427 431 SUPERFAMILY Protein kinase-like (PK-like) 8 324 IPR011009 -
Amo02g0427 431 Pfam NAF domain 303 363 IPR004041 GO:0007165
Amo02g0427 431 CDD CIPK_C 307 420 - -
Amo02g0427 431 Gene3D Transferase(Phosphotransferase) domain 1 91 291 - -
Amo02g0427 431 ProSiteProfiles NAF domain profile. 301 325 IPR018451 GO:0007165
Amo02g0427 431 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 5 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0427 Amo-Chr2 5317310 5321998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0427 4 428 CBL-interacting serine-threonine protein kinases AT1G01140 75.463 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Amo02g0427 Pkinase 1.5e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0427 - - gmx:100794136 768.459