Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0423 ATGGCTCTGGTGTGTGGTTCCGCGTCGGTGACGTTCCCTTCATCTTCTTTCCCACGTCACAGCCACAGGAATACCTCTTCCTCTTCCTCTTCCTCATTGGTTGGGTTACAATTTCCATTTCACAAGCTGGTATCCTTATCATTATCTCCCTCTTCTTCTTCCAACACCAATGCAAGGACCCTCCGTATCCATTCTCAGCAGCAAGATTCTTCAATCCTTCCTCCAGAACAAGATCCACGCTTCCTCTGCGTCGAACCCGAACCCCGATTCAAAGGCCCGGACATTTGGAACAAGACCTGGTATCCAAAAGCTGCCGATCATGTTAATACGGAGAAAACATGGTATGTTGTTGATGCTACAGACAAAGTTCTTGGCAGACTGGCGTCAACGATTGCTATTCATATCCGAGGGAAAAATCTAGAAACCTATACTCCCAGCGTGGACATGGGTGCATTTGTAATTGTGGTGAATGCTGAAAAGGTTGCTGTATCTGGGAAAAAGAGAACCCAAAAGCTTTACAGGAGGCACTCTGGTAGACCTGGTGGTATGAAAGTAGAGACATTTGCTCAACTGCAGAACAGAATTCCTGAAAGAATTATCGAACATGCTGTTCGTGGCATGCTTCCGAAGGGGAGGCTTGGGAGGAGGCTATTCACCCACCTGAAGGTTTATGAGGGTCCAGATCATCCTCATGCTGCGCAGAAGCCCATCGAACTGCCAATTCAGGATAAGAGAATATATTTACAGAGATAG 753 0.4688 MALVCGSASVTFPSSSFPRHSHRNTSSSSSSSLVGLQFPFHKLVSLSLSPSSSSNTNARTLRIHSQQQDSSILPPEQDPRFLCVEPEPRFKGPDIWNKTWYPKAADHVNTEKTWYVVDATDKVLGRLASTIAIHIRGKNLETYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFAQLQNRIPERIIEHAVRGMLPKGRLGRRLFTHLKVYEGPDHPHAAQKPIELPIQDKRIYLQR* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0423 250 TIGRFAM rplM_bact: ribosomal protein uL13 108 239 IPR005823 GO:0003735|GO:0005840|GO:0006412
Amo02g0423 250 ProSitePatterns Ribosomal protein L13 signature. 204 226 IPR023563 GO:0003735|GO:0005840|GO:0006412
Amo02g0423 250 SUPERFAMILY Ribosomal protein L13 108 241 IPR036899 GO:0003735|GO:0005840|GO:0006412
Amo02g0423 250 Gene3D Ribosomal protein L13 103 246 IPR036899 GO:0003735|GO:0005840|GO:0006412
Amo02g0423 250 Pfam Ribosomal protein L13 112 230 IPR005822 GO:0003735|GO:0005840|GO:0006412
Amo02g0423 250 CDD Ribosomal_L13 114 227 IPR005822 GO:0003735|GO:0005840|GO:0006412
Amo02g0423 250 Coils Coil 241 250 - -
Amo02g0423 250 Hamap 50S ribosomal protein L13 [rplM]. 114 240 IPR005822 GO:0003735|GO:0005840|GO:0006412
Amo02g0423 250 PANTHER RIBOSOMAL PROTEIN L13 64 250 IPR005822 GO:0003735|GO:0005840|GO:0006412
Amo02g0423 250 PANTHER 50S RIBOSOMAL PROTEIN L13, CHLOROPLASTIC-LIKE 64 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0423 Amo-Chr2 5214263 5217718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0423 116 249 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 31.915 3.94e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0423 K02871 - gmx:100305981 372.474