Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0395 ATGGGTTTTCCGGTGGGCTACACGGAGGTTTTCTTCCCTCACCTCTTCCTCCGCTTACTCACCTTCCTCGGCCTCCTCCGTAACCTCGTCTTCCACCTCTTCCGCCTCCTCGGACTCTCTGAACTCCTCATCGACACCACCACCGACAACAACAACAACTACTACAACCACAACCCCAACCCAACCCGGACCCCCTCCGCCGTCGACCGTACACCATCCCTCTCCGCCATCCTCATCCGCGAGTTCCTCCCCGTCGTAACCTTCAGAGAAATCCTGGCTAACGATGACGTGGCATCGCCTCAACTAACTGGCAGCTGCGCGGTTTGCCTAACGGAATTAGTTATGGAGGACGAGATCCGGTGGTTGCGTAACTGCAAGCACGTGTTCCACAGGGAGTGTGTGGACCGTTGGATTGATCACGATCAGAAGACGTGTCCGCTTTGTAGGACGTCGTTTGTTCCTGATGAAATGGTTGATCAGTATAATCAACGGTTGTGGGCTGCTTCTGGTGTTAGTGAGTTCTACGTAGATTACACTTCTCTCTAA 546 0.5385 MGFPVGYTEVFFPHLFLRLLTFLGLLRNLVFHLFRLLGLSELLIDTTTDNNNNYYNHNPNPTRTPSAVDRTPSLSAILIREFLPVVTFREILANDDVASPQLTGSCAVCLTELVMEDEIRWLRNCKHVFHRECVDRWIDHDQKTCPLCRTSFVPDEMVDQYNQRLWAASGVSEFYVDYTSL* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0395 181 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 179 - -
Amo02g0395 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 154 IPR013083 -
Amo02g0395 181 PANTHER BNACNNG20990D PROTEIN 1 179 - -
Amo02g0395 181 CDD RING-H2 106 149 - -
Amo02g0395 181 Pfam Ring finger domain 105 149 IPR001841 -
Amo02g0395 181 ProSiteProfiles Zinc finger RING-type profile. 106 149 IPR001841 -
Amo02g0395 181 SUPERFAMILY RING/U-box 83 155 - -
Amo02g0395 181 SMART ring_2 106 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0395 Amo-Chr2 4869701 4870572 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0395 1 180 C3H Transcription Factor Family AT1G63840 43.407 1.27e-44 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0395 K16281 - gmx:100790975 200.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo04g2798 04 101698271 101699438 Amo02g0395 02 4869701 4870572 PCT
Amo02g0395 02 4869701 4870572 Amo04g2798 04 101698271 101699438 PCT