Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0369 ATGGCTGCTGTTAGGTTTTCCCATTTAAAACGCCTCCAGAGTTCAATCAAGGGTTCTCTGAATGTTGAACTGTGTCACAATAGTGTGGATATGAATCTTGCAAGAAGTGCAAGGTTGCCTAGTGATTCACTTAGCAATGTTTATTACAAAAGGGAGTTACAGTCACCTCGAATTTTCACGAAGAATCAGTTTAGGAGTATTCCTTCTGAATGTCATGCAAGTAGTTCCCCTGTTATTACTAAACACAATGCATTAGTTTATCCTGGGTTGTCGCCTAGCTTTCGAATCCGGGGTGCTCTTCCTTTTGCTTCAATGAGCCCTGGGTTGAATTGCCGGACATTTTCGTCGGTTTTGGGTGGCAAAGGAAGCAGGGATCATAATGGCACAGAAATTGCTGCTGGTGCTGGTGATGATTCTGTTGTTGCTGGTGATCTAGCTGAGAAGGTGAAAGATACATGGAAGAGTGTGGTAGAGACAGCAACACATGCTGGAGAAAAGGTTAAAGAAGCCTCGGATGAGCTGACTCCGTATGCTCAACAGTTGCTTGATTCACATCCGTATCTTAACAAGGTGGTTATTCCAGTTGGTAGTACATTAACTGCTACTCTAGTAGCTTGGTTTTTGATGCCTTGGATTTTGAGGAAATTTCACAAATATGCAATGAAAGGCCCAATTTCTCTAATACCTGGAAGCACATCATGGGAACAAGTTACTTATGAGAAAAGCTTTTGGGGTGCTATGGAAGACCCAGTGCGATATTTAGTTACCTTCATCACATTATCACAGATTGGTGCAATGGTAGCTCCAACAACTATAACTTCACAATATCTTGTGCCGGCTTGGAGGGGYGCAGCGATTATTTCRTTTGTATGGTTTTTGCATAGATGGAAGACAAATGTTTTTCATCGTACCCTGTCCAATCAAGGTTTACTTGGACTTGACAGGGAGAAATTGCTCACTCTAGATAGAATCTCATCTGTTGGTCTGTTTATGATTGGTATAATGGCTTTGGCTGAGGCTTGTGGTGTGGCTGTGCAATCTATTGTAACTGTTGGTGGTATCGGAGGAGTTGCTACTGCTTTTGCTGCAAGAGATATCCTTGGCAATGTTTTCAGTGGTTTATCTATGCAGTTTTCCAGGCCCTTTTCAATAGGAGATACAATAAAAGCTGGCTCAGTTGAGGGTCAAGTGGTGGAAATGGGCCTTACTACAACATCGTTGCTGAGTACTGAGAAGTTTCCAGTCATAGTGCCGAATTCCTTTTTTTCTAGCCAGGTTATAGTGAACAAATCTCGTGCTGAGTGTCGTGGCATCATCAGCAAAATCCCTTTGCAAATTGAGGATTTAAGTAAGATTCCCCAGTTATCTGAGGATATAAAAAGCATGCTAAGATCACATGCAAAGGTGTTCTTGGGAAAAGAGGTTCCTTACTGTTTCTTGTCAAGAGTGGGAAAGTTCATATGCAGAATTGACTATTGGATACAACCTCAAACACATGCGCAAAGATGA 1509 0.4195 MAAVRFSHLKRLQSSIKGSLNVELCHNSVDMNLARSARLPSDSLSNVYYKRELQSPRIFTKNQFRSIPSECHASSSPVITKHNALVYPGLSPSFRIRGALPFASMSPGLNCRTFSSVLGGKGSRDHNGTEIAAGAGDDSVVAGDLAEKVKDTWKSVVETATHAGEKVKEASDELTPYAQQLLDSHPYLNKVVIPVGSTLTATLVAWFLMPWILRKFHKYAMKGPISLIPGSTSWEQVTYEKSFWGAMEDPVRYLVTFITLSQIGAMVAPTTITSQYLVPAWRGAAIISFVWFLHRWKTNVFHRTLSNQGLLGLDREKLLTLDRISSVGLFMIGIMALAEACGVAVQSIVTVGGIGGVATAFAARDILGNVFSGLSMQFSRPFSIGDTIKAGSVEGQVVEMGLTTTSLLSTEKFPVIVPNSFFSSQVIVNKSRAECRGIISKIPLQIEDLSKIPQLSEDIKSMLRSHAKVFLGKEVPYCFLSRVGKFICRIDYWIQPQTHAQR* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0369 502 Pfam Mechanosensitive ion channel 324 476 IPR006685 GO:0016020|GO:0055085
Amo02g0369 502 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 279 364 IPR011014 GO:0016020
Amo02g0369 502 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 115 486 - -
Amo02g0369 502 SUPERFAMILY Sm-like ribonucleoproteins 365 430 IPR010920 -
Amo02g0369 502 Gene3D - 280 380 - -
Amo02g0369 502 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 115 486 - -
Amo02g0369 502 Gene3D - 381 429 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0369 Amo-Chr2 4534038 4536960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0369 65 485 Mechanosensitive Ion Channel Family AT4G00290 59.318 5.99e-172 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0369 K22047 - gmx:100814954 657.521