Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0336 ATGGCCACTTCCGCCGCTGCGCCGCGCCAGCTCTCTCAGAAGGAGCAAGACATCCAGATGATGCTTGCGGCTGAGGTGCATTTGGGAACCAAAAACTGCGACTTCCAGATGGAACGCTATGTCTTCAAACGCCGCAATGATGGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAACTTGCTGCTAGGATTATTGTCGCCATCGAGAATCCACAGGACATCATTGTTCAGTCTGCTAGGCCATATGGTCAAAGGGCAGTCTTGAAATTTGCCCAATACACCGGTGCAAATGCAATTGCTGGAAGGCACACTCCTGGAACATTCACTAATCAGATGCAGACATCCTATAACGAGCCTCGCCTTCTTATTCTGACTGATCCAAGGACTGATCATCAGCCCATTAAGGAAGGTGCTCTTGGAAATATTCCAACAATTGCCTTTTGCGATACTGATTCTCCAATGCGGTATGTTGATGTTGGCATTCCTGCCAATAATAAYGGGAAGCACAGTATTGGTTGTCTTTTTTGGCTATTAGCAAGGATGGTTTTGCAGATGAGGGGTATTATTCGTCCAGGGCTTAAATGGGATGTGATGGTGGATCTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAGGAGGAAGCACCAGCTGCCCCAGAATATGCCATTCAAGACTTTGGTGCTGCTGGCATTGCCGGTTTCCCCACAGCTGATGGTGAATGGGCGGCTGTCACAGAACAACCCTGGCCCGAGGCAGTTCCACAACAACCTATTGCAGCTGCGCCTGCTGATTGGGCCCCAGATACTTCTGCAGCTGCAGGTGATTGGGAACCGGTTCCAGCTCCTCAGCCTTCTGTTCCGGCACCCGGAGCTGTTGCTCCCACTGGTTGGGAATAG 915 0.4984 MATSAAAPRQLSQKEQDIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNNGKHSIGCLFWLLARMVLQMRGIIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAAPEYAIQDFGAAGIAGFPTADGEWAAVTEQPWPEAVPQQPIAAAPADWAPDTSAAAGDWEPVPAPQPSVPAPGAVAPTGWE* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0336 304 SUPERFAMILY Ribosomal protein S2 13 203 IPR023591 -
Amo02g0336 304 ProSitePatterns Ribosomal protein S2 signature 1. 18 29 IPR018130 GO:0003735|GO:0005840|GO:0006412
Amo02g0336 304 Gene3D - 17 223 - -
Amo02g0336 304 MobiDBLite consensus disorder prediction 257 304 - -
Amo02g0336 304 PANTHER 40S RIBOSOMAL PROTEIN SA 8 276 IPR005707 GO:0003735|GO:0006412|GO:0015935
Amo02g0336 304 ProSitePatterns Ribosomal protein S2 signature 2. 122 146 IPR018130 GO:0003735|GO:0005840|GO:0006412
Amo02g0336 304 PRINTS Ribosomal protein S2 signature 48 57 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo02g0336 304 PRINTS Ribosomal protein S2 signature 122 139 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo02g0336 304 PRINTS Ribosomal protein S2 signature 18 36 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo02g0336 304 PRINTS Ribosomal protein S2 signature 97 114 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo02g0336 304 PRINTS Ribosomal protein S2 signature 139 150 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo02g0336 304 PRINTS Ribosomal protein S2 signature 160 174 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo02g0336 304 Pfam Ribosomal protein S2 21 116 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo02g0336 304 PANTHER 40S RIBOSOMAL PROTEIN SA 8 276 - -
Amo02g0336 304 CDD RPS2 21 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo02g0336 304 Hamap 40S ribosomal protein SA [rps-0]. 5 250 IPR027498 GO:0003735|GO:0006412|GO:0015935
Amo02g0336 304 TIGRFAM uS2_euk_arch: ribosomal protein uS2 14 209 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0336 Amo-Chr2 4090483 4093181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0336 5 296 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 72.603 1.98e-149 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0336 K02998 - gmx:100786575 461.84