Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0335 ATGTCAGTCTACGACGCAGCATTCGTAGAAACACAGCTCTCAAAGCGCACTTCCATCTTCGGCCTCCGTCTATGGGTCCTCATCGGAATCCTCGTCGGAGCTCTCATCGTCTTCTCCCTCTTCCTCCTTTCTCTCTGCTTCACCTCCCGCCGCAACCGCCGCCACCGCCGCAACCACAAGCCTCTCACTCCTCTCGTCTCCAAGGAAATCCAGGAAATCATTTCCACTCCTCCCAATCCTCAACCGCATGAACTCCACCTCGACATCGGAAAAGCTGCGGCGGCGGAGCAGCACCGCAGGGTGGTGTCTGCTGTGGCTTTCTCAAGCGGAGAAAGCAAAGGCGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAAGCGTGTGCGAAACGACGTCGTCGTTTGGGAGTGGAAGCGTATCGGCGGGACCAGAGGTTTCGCATCTTGGTTGGGGGAAGTGGTTTACGCTGAGGGAAATGGAGGATGCGACTGGAGGAATGTGTGAGGAGAATGTGATCGGTGAAGGTGGCTATGGAATCGTGTACCGTGGTGTTCTCTCTGATGGTACCAATGTTGCTGTTAAGAATCTCTTGAATAACAAGGGACAAGCTGAGAGAGAATTTAGGGTAGAGGTAGAAGCTATTGGTCGTGTGCGGCACAAGAATCTTGTTAGATTGCTTGGATACTGTGTTGAGGGCGCATACAGGATGCTTGTGTATGAATATGTTGACAACGGAAATCTGGACGAGTGGCTGCATGGGGATGTTGATTCTGTAAGCCCTCTGACTTGGGATATCCGGATGAACATCATCTTGGGAACGGCAAAAGGATTGGCTTATCTTCATGAGGGGCTCGAACCAAAAGTTGTCCACCGAGACGTGAAATCAAGCAATATACTCCTTGATCGCCAATGGAACCCAAAGGTTTCTGACTTTGGGCTCGCTAAGCTTCTGTGTTCTGATCATAGCTATGTCACAACCCGAGTGATGGGGACATTTGGTTATGTTGCACCGGAGTATGCATGCACTGGAATGCTGACTGAGAAGAGTGATGTTTATAGCTTTGGGATACTTATTATGGAAATAATTACCGGAAGAAGTCCCGTTGATTATAGTAAACCCCAAGGAGAGGTTAATTTAATTGAGTGGTTGAAAACTATGGTTGGCAATAGAAAATCAGAGGAACTCATCGATCCGAACCTTCCTGAAAAGCCGTCTTCAAAGGCTCTTAAGCTTGCTCTATTGGTTGCTCTTAAATGTGTTGATCCTGATGCCACAAAGAGACCTAAAATCGGACACATAATCCACATGCTTGAGGCCGACGACATTCTATTCCGTGATGAACGGAGGACCGGAGGAGAATCGTCGCGATCCCATCGCAATTATCATCATCATCATGAGCAAAAGGACTCTAGCAGAGATAGAAAGCGAATAGGTGGAGAGATCACTGATCAAAGTGAAGATGATAGTAGTAGTAAAATCTTGCCCATCCCACTAGATTGA 1512 0.4934 MSVYDAAFVETQLSKRTSIFGLRLWVLIGILVGALIVFSLFLLSLCFTSRRNRRHRRNHKPLTPLVSKEIQEIISTPPNPQPHELHLDIGKAAAAEQHRRVVSAVAFSSGESKGGGGGGGGGGGGGGGGSVCETTSSFGSGSVSAGPEVSHLGWGKWFTLREMEDATGGMCEENVIGEGGYGIVYRGVLSDGTNVAVKNLLNNKGQAEREFRVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLDEWLHGDVDSVSPLTWDIRMNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNPKVSDFGLAKLLCSDHSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYSKPQGEVNLIEWLKTMVGNRKSEELIDPNLPEKPSSKALKLALLVALKCVDPDATKRPKIGHIIHMLEADDILFRDERRTGGESSRSHRNYHHHHEQKDSSRDRKRIGGEITDQSEDDSSSKILPIPLD* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0335 503 CDD STKc_IRAK 176 442 - -
Amo02g0335 503 MobiDBLite consensus disorder prediction 453 491 - -
Amo02g0335 503 ProSiteProfiles Protein kinase domain profile. 170 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo02g0335 503 PANTHER BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1 487 - -
Amo02g0335 503 Pfam Protein kinase domain 173 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo02g0335 503 PANTHER OS01G0323000 PROTEIN 1 487 - -
Amo02g0335 503 Gene3D Phosphorylase Kinase; domain 1 144 245 - -
Amo02g0335 503 ProSitePatterns Protein kinases ATP-binding region signature. 176 198 IPR017441 GO:0005524
Amo02g0335 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 292 304 IPR008271 GO:0004672|GO:0006468
Amo02g0335 503 MobiDBLite consensus disorder prediction 453 503 - -
Amo02g0335 503 MobiDBLite consensus disorder prediction 108 140 - -
Amo02g0335 503 SMART serkin_6 170 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo02g0335 503 Gene3D Transferase(Phosphotransferase) domain 1 246 454 - -
Amo02g0335 503 SUPERFAMILY Protein kinase-like (PK-like) 147 442 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0335 Amo-Chr2 4083894 4086971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0335 157 446 Trihelix Transcription Factor Family AT5G38560 47.333 4.26e-90 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Amo02g0335 Pkinase 8.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0335 - - gmx:100777348 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo04g2342 04 95300462 95305047 Amo02g0335 02 4083894 4086971 PCT
Amo02g0335 02 4083894 4086971 Amo04g2342 04 95300462 95305047 PCT