Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0327 ATGGTGTCGGTGAATCCGAACCCAGCTCAAGGATTTTACTTCTTCGATCCTTCTTCGTCCAATATGGGACTTCCCGGCGTTAATCCGATGCCGCCTCCGCCTCCGCCGCAGCATGCTCCGGCAACCGTGCCATCAGCTGCGTCTTCCGCCGTTAACGTGGCGGAGGATCCGAGTAAGAAGATCCGGAAACCCTACACGATTACTAAGTCTAGGGAGAGCTGGACCGAGCAGGAGCATGACAAGTTTCTAGAAGCTCTTCAATTATTTGATCGTGATTGGAAGAAGATTGAAGCATTTGTCGGCTCAAAAACTGTTATCCAGATACGGAGTCATGCACAAAAATATTTCCTTAAAGTCCAGAAGAATGGAACAAGTGAACATGTACCTCCCCCTCGGCCAAAGAGAAAAGCTTCTCATCCATACCCTCAAAAAGCTCCCAAGAGTGCTCCTACTGCATCCCATGTCACTGGGCCATTGCAATCTTCCTCAGCTTTCATTGAACCTGCATACATTTATAGCCCGGATTCATCATCTGTGCTAGGAACTCCAGTAACCAGTGTGCCTTTATCATCTTGGAATTATAACACCATGCCACCAAGCAATGTGCCCCCAAGCAATGTGCCACCAGCAACTAAAGATGATATAGGATTGGCTGGAGCTGGACAAGCTGTTCCTCTTACTTGTTGCTATAGCAGCAGTAATGAGAACACCCCTCCAACTTGGCCAAGTAACAATGGGTTTGAACAAAGAAACCAGGCCAAGCCAATTAAAGTTATGCCAGATTTTGCACAAGTCTACAGCTTCATTGGCAGTGTATTTGATCCAAATTCGACTAATCATCTCCAGAGGCTGAAACAGATGGACCCAATAAATATGGAAACGGTACTGTTGTTGATGAGAAACCTCTCCATGAATCTAATGAGTCCTGAATTTGAGGATCATAAGAGGTTGCTTTCGTCATACGGAGCCAACTCTGAAGAGGCAAAGTTTGTCAATCCTTGCAGCAAGTTGCTCAAATCTGAGAGTGCTGTTCTAACTGCTTAA 1044 0.4607 MVSVNPNPAQGFYFFDPSSSNMGLPGVNPMPPPPPPQHAPATVPSAASSAVNVAEDPSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKASHPYPQKAPKSAPTASHVTGPLQSSSAFIEPAYIYSPDSSSVLGTPVTSVPLSSWNYNTMPPSNVPPSNVPPATKDDIGLAGAGQAVPLTCCYSSSNENTPPTWPSNNGFEQRNQAKPIKVMPDFAQVYSFIGSVFDPNSTNHLQRLKQMDPINMETVLLLMRNLSMNLMSPEFEDHKRLLSSYGANSEEAKFVNPCSKLLKSESAVLTA* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0327 347 MobiDBLite consensus disorder prediction 26 41 - -
Amo02g0327 347 CDD SANT 73 116 IPR001005 -
Amo02g0327 347 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 69 118 IPR006447 GO:0003677
Amo02g0327 347 MobiDBLite consensus disorder prediction 24 57 - -
Amo02g0327 347 PANTHER SWI/SNF COMPLEX-RELATED 2 342 - -
Amo02g0327 347 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Amo02g0327 347 SUPERFAMILY Homeodomain-like 65 121 IPR009057 -
Amo02g0327 347 Gene3D - 74 121 - -
Amo02g0327 347 Pfam Myb-like DNA-binding domain 71 116 IPR001005 -
Amo02g0327 347 ProSiteProfiles SANT domain profile. 69 122 IPR017884 -
Amo02g0327 347 MobiDBLite consensus disorder prediction 120 157 - -
Amo02g0327 347 PANTHER MYB TRANSCRIPTION FACTOR 2 342 - -
Amo02g0327 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Amo02g0327 347 SMART sant 70 118 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0327 Amo-Chr2 4019883 4024039 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo02g0327 Myb_DNA-binding 3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0327 - - adu:107472769 634.795