LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo02g0323	ATGGTGGACGAAGAAGGTGAATTCGCCGGCACAATTTGCTCCATTTGCTACGAAGATCTCAAACCAGTTTCCGAAGATCTTCAATCTATCTCCGTTTGCGGCCACGTCTTCCACGAGCTTTGCTTGCAGCAATGGTTCGAGTACTGTTCGAAAGCGAAGAAGCACACTTGCCCCGTTTGCAAGCAGAGTTGCAGGGTCGGCGATGCTTGCAGGCTTTACTTCCAATCGGTGGGCGATGTGGTCGAATCTGTTATGCATAGGAAACCATTTGATTCCGAAGAAGATTCCGGAGTTTTGAGAAAGGAAGTGAACAGGTTGGAGGTCAGGCTTTCGGGGCTTAGTTCAGAGTTGGAGAAGAAGGTGAAGGAAATTGAGCAGCTCACGAAGGAGCTTGGTGCTTGCAAGGAGAAAGCAAAGATTGAAATAGCATTAAAAAATGAGGCCTTGAGTCAAAAAGCATCCATGCAAACCGAGCTTCGTATGAAGTCAGAGGAGCTTGAGAAGTCAACTTTTGAGTGCTATTCATTACAAAAAAGAAATATCACTTTGGCTAAGGAAATTGCAGCATTTAAATTAGTCTCTGATATTGACCTTAATGAAGAGGAAGTTTTGAAGTATGCAACTTTGGGTAACGGGTTTAATGATAAAGATACGATAGACACATTGAGCAGATCTATGGTTCGGCGTAACAGGGATTACAAAGATCTAATAGCTAAACGCAATGAATTAGTGGCCAAGTGCAATCATCTAGAAAAGGGTGAGGCTCGGTACATTAAAAAGCTTGAGAAGGCTAAGGAGAAGATTCTTAAATTGAAGGCTAGGGTACAAGAACTAGAGACAGCTGCAGAAGTAAGAGAGAACCATTATCTGAAGTCTTTGAAAGCTTCAAAGATGAATAAGTGTTCAAATAATCTTGAAAACAACCTCAGTTCTAAGAATGATGTACCCACGACCAGCAATACTCCATTAAATGAGCAAACTAAACAAACTTCACCCAAATCTGAAATGGACTTGAGTGTGAGCAACAGTAAATCTCTACAATTTTCAAGGATAGTCAACTGCATTCCTACCGAAAGTAAAGCTGTAAATGTTAGTAATGAAAATAAATCTACCCCTGCTCTTCGAAAAGAGAGGGATTTTATATCTCTTGATGCTGATGCTTCAGAATTTACTGAACCTTTGTCTGGAGGGTCAAGACGTGACTGCAATGATCGATACAGGGATGGTGCTGCTCTTAGCAAGCCTACTGTAGCCAAGTCAGATGCAGCATCCGAAAAGAAGGAAGAAACAGCAGCTCAAGGAACATGTAACTTGGCTGATTCTTCAAGAATTGACATTGATGTTGAAATGACGAAAAATGATGTCATTGATTTGGATGATGATATAACATTACTCGATAAACAAGTTCAACCCAAGGTTAATATTATAAAGGAGTCACCACCAATAATTGCAAATCCAGGGGACATTTGTTTTTCTGGCGGATTGCTTGGTCCTGATGGATCACATAGGTACTTGGGTAAATGGTGCAAGCGTAGAAAAAATGGCGAATCGCAATCGGTAGATGGAGGATTGATAGCTGTTGGGGCTGATGGTAGAGGTGGCAGAATTAAAGTTCTAAGGACCGCAGGCCAAACCTTCATGGATGACAAGGAAAATGACAAGGAATCAAAAAGGTTAAAGGTTGGACCTAAGAGAAGTAGTTTGCGACCCCAGGGATGTCTGCAGATAGATCACTTCTTTGGCAGGGTTAATCACTAA	1758	0.4164	MVDEEGEFAGTICSICYEDLKPVSEDLQSISVCGHVFHELCLQQWFEYCSKAKKHTCPVCKQSCRVGDACRLYFQSVGDVVESVMHRKPFDSEEDSGVLRKEVNRLEVRLSGLSSELEKKVKEIEQLTKELGACKEKAKIEIALKNEALSQKASMQTELRMKSEELEKSTFECYSLQKRNITLAKEIAAFKLVSDIDLNEEEVLKYATLGNGFNDKDTIDTLSRSMVRRNRDYKDLIAKRNELVAKCNHLEKGEARYIKKLEKAKEKILKLKARVQELETAAEVRENHYLKSLKASKMNKCSNNLENNLSSKNDVPTTSNTPLNEQTKQTSPKSEMDLSVSNSKSLQFSRIVNCIPTESKAVNVSNENKSTPALRKERDFISLDADASEFTEPLSGGSRRDCNDRYRDGAALSKPTVAKSDAASEKKEETAAQGTCNLADSSRIDIDVEMTKNDVIDLDDDITLLDKQVQPKVNIIKESPPIIANPGDICFSGGLLGPDGSHRYLGKWCKRRKNGESQSVDGGLIAVGADGRGGRIKVLRTAGQTFMDDKENDKESKRLKVGPKRSSLRPQGCLQIDHFFGRVNH*	586

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo02g0323	585	PANTHER	RING ZINC FINGER PROTEIN-RELATED	1	583	-	-
	Amo02g0323	585	Pfam	Ring finger domain	12	61	IPR001841	-
	Amo02g0323	585	SUPERFAMILY	RING/U-box	10	65	-	-
	Amo02g0323	585	SMART	ring_2	13	60	IPR001841	-
	Amo02g0323	585	ProSiteProfiles	Zinc finger RING-type profile.	13	61	IPR001841	-
	Amo02g0323	585	Coils	Coil	103	137	-	-
	Amo02g0323	585	MobiDBLite	consensus disorder prediction	302	340	-	-
	Amo02g0323	585	CDD	RING-H2	13	61	-	-
	Amo02g0323	585	MobiDBLite	consensus disorder prediction	549	568	-	-
	Amo02g0323	585	Coils	Coil	254	281	-	-
	Amo02g0323	585	MobiDBLite	consensus disorder prediction	391	434	-	-
	Amo02g0323	585	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	2	64	IPR013083	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo02g0323	492	585	C3H Transcription Factor Family	AT4G01270	40.594	1.15e-15	78.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo02g0323	K11985		-	gmx:100812811	665.996