Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0322 CTTTTTCTCTCCTCCTTTTCAATAGCATCTTATCTCTCTCTCTCTCTCTCTCTCTCAAACCTTACAAAAAGTCAGCGCCTTCTTTTGTCCCTTTTCTCACACCAACACATCTTTTGCAGACTCTGTCTCTTACCCTTCTCTTCAACATGGACGACGATTGGGATCTCCACGCCGTTGTTAGAGGCTGCGCCACCATTTCCTCCACCTCTTCCACCACCACTACCACCACCTCCAACCACCACTTCCTACCAACCTCCACCTTCTTCTTCATGTGGGTTCTTTAACGAACAACAAAGCAATGTTTTTTCGGTTTCCAACAACAACCCTTTTGAATTAAGAAGCTCCATTCAGGAACTTCAGCATAATCATAATCTTTGCAAGCCTTTCTTCTTCAAATCACAGCCTTTTCAGTCTTTTCAATCCTCTTCTTCTTCGTCATCACCACCCAATTCAGCTCTGACACAACATAAACAGCAGCAACAGAACTGTAATAACGGTAAGAACCCTCACCATGCAGGTTCAGCTACCACCCCACGATCTAAAAGAAGGAAGAATCAGCTTAAGAACGTTTGTCAAGTTTCAGCTGAGAATCTCTCCTCAGACGTATGGGCATGGAGGAAATATGGACAGAAACCCATCAAAGGTTCACCATATCCAAGAGGATATTATAGATGTAGCAGCTCAAAAGGATGTTTGGCTAGAAAACAAGTTGAAAGGGACAGATCAGATCCAACAAAGTTCATAGTTACATTCACTGGTGTACACAACCACCCTGCTCCAACTCATAGAAACTCACTTGCTGGCTCTTCACGCCAAAAGCTACAAACACCTGAAATAGCCACTACAGGGGACACTGAAATGGTCCTCACAATGAAGCCGGTCTCGATTTCGGCTTCTCCTTCCACTTCAGGAGTGGAAGAAGAGGCTGAAACCGAGGCCACACCGGCGCAGAAGTCGGAGAGCGAAGAGGACAACATGGAGGATTATTTGATGAATGATGATGATGGTGGGCTTGAGGAAACTGAGTTTGGTTCACCAGATATGGAGATAACTGATGATTTCTTTGAAGGGTTGGATGAACTGACAACAGCCACTGATGGAGACTCATGCTTTTCAACAAGTGTTCCTAATCCTTCTCTTCCTCCTTTTGTGGCCAATAGTGCTGCCACTGCTGCTGGTGGTAGCTGA 1188 0.4512 LFLSSFSIASYLSLSLSLSNLTKSQRLLLSLFSHQHIFCRLCLLPFSSTWTTIGISTPLLEAAPPFPPPLPPPLPPPPTTTSYQPPPSSSCGFFNEQQSNVFSVSNNNPFELRSSIQELQHNHNLCKPFFFKSQPFQSFQSSSSSSSPPNSALTQHKQQQQNCNNGKNPHHAGSATTPRSKRRKNQLKNVCQVSAENLSSDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERDRSDPTKFIVTFTGVHNHPAPTHRNSLAGSSRQKLQTPEIATTGDTEMVLTMKPVSISASPSTSGVEEEAETEATPAQKSESEEDNMEDYLMNDDDGGLEETEFGSPDMEITDDFFEGLDELTTATDGDSCFSTSVPNPSLPPFVANSAATAAGGS* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0322 395 ProSiteProfiles WRKY domain profile. 194 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo02g0322 395 SUPERFAMILY WRKY DNA-binding domain 194 260 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo02g0322 395 MobiDBLite consensus disorder prediction 311 325 - -
Amo02g0322 395 Gene3D WRKY domain 183 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo02g0322 395 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 80 395 IPR044810 GO:0003700
Amo02g0322 395 MobiDBLite consensus disorder prediction 326 347 - -
Amo02g0322 395 MobiDBLite consensus disorder prediction 296 347 - -
Amo02g0322 395 MobiDBLite consensus disorder prediction 254 274 - -
Amo02g0322 395 MobiDBLite consensus disorder prediction 257 274 - -
Amo02g0322 395 SMART WRKY_cls 199 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo02g0322 395 MobiDBLite consensus disorder prediction 140 175 - -
Amo02g0322 395 Pfam WRKY DNA -binding domain 201 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo02g0322 395 MobiDBLite consensus disorder prediction 64 89 - -
Amo02g0322 395 MobiDBLite consensus disorder prediction 140 185 - -
Amo02g0322 395 MobiDBLite consensus disorder prediction 64 84 - -
Amo02g0322 395 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 80 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0322 Amo-Chr2 3938490 3940374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0322 177 394 WRKY Transcription Factor Family AT4G01250 53.881 3.22e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo02g0322 WRKY 1.3e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0322 K13425 - gmx:100815829 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo04g2352 04 95754257 95756025 Amo02g0322 02 3938490 3940374 PCT
Amo02g0322 02 3938490 3940374 Amo04g2352 04 95754257 95756025 PCT