Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0212 ATGGCAAGTGGGTTTGGGGAATCAACGAGCAAGTCTCCCCCAAGCCCTTCGTACTCGAACAACAGCAATAACAACAATGATGCTGGCAAYTTTGAATGCAACATATGCTTYGATTTAGCACAAGACCCAATTATCACTTTGTGTGGCCACCTCTTCTGCTGGCCATGTCTCTACAAGTGGCTKCACCTCCACTCGCAATCGCAAGAATGCCCCGTCTGCAAGGCCGCCATTGAGGAGGAGAAGCTGGTTCCATTGTATGGGAGAGGGAAGACATCAACTGACCCGAGATCAAAAACTATTCCGGGTCTTAATATCCCTCATCGTCCTACCGGTCAGAGACCTGAAACTGCAGCTCCTCCTCCCGAAGCAAACCATTTTCATCAACATGGATTTGGTCTAATGGGTGGCTTGGGAGGCTTTGCACCAATGGCRACTGCAAGATTTGGGAATTTCACCTTGTCTGCGGCATTTGGTGGTTTTATACCATCCYTGTTCAACTTTCAATTGCACGGATATCATAATGGGTCCATGTATGGTGGAGCAGCTGGTTATCCTTATGGATACTCTAATTCATTTCACGGTGTCCATGCTCATAGATATCCTCTGCATGCTGGTCAAGGGCAACAAGATTATTACCTGAAGAGGCTCCTTCTGTTTGTCGTCTTCTTTGTTGTCCTTGCTTTTATCTGGCAATAG 696 0.467 MASGFGESTSKSPPSPSYSNNSNNNNDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHLHSQSQECPVCKAAIEEEKLVPLYGRGKTSTDPRSKTIPGLNIPHRPTGQRPETAAPPPEANHFHQHGFGLMGGLGGFAPMATARFGNFTLSAAFGGFIPSLFNFQLHGYHNGSMYGGAAGYPYGYSNSFHGVHAHRYPLHAGQGQQDYYLKRLLLFVVFFVVLAFIWQ* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0212 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 231 IPR045103 GO:0005783|GO:0006511|GO:0061630
Amo02g0212 231 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Amo02g0212 231 SMART ring_2 33 73 IPR001841 -
Amo02g0212 231 ProSiteProfiles Zinc finger RING-type profile. 33 74 IPR001841 -
Amo02g0212 231 MobiDBLite consensus disorder prediction 87 122 - -
Amo02g0212 231 SUPERFAMILY RING/U-box 30 86 - -
Amo02g0212 231 MobiDBLite consensus disorder prediction 1 23 - -
Amo02g0212 231 CDD RING-HC_AtRMA_like 31 75 - -
Amo02g0212 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 87 IPR013083 -
Amo02g0212 231 PANTHER OS12G0636000 PROTEIN 2 231 - -
Amo02g0212 231 Pfam Zinc finger, C3HC4 type (RING finger) 31 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0212 Amo-Chr2 2344515 2346144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0212 31 214 C3H Transcription Factor Family AT1G19310 67.196 7.42e-88 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0212 K10666 - gmx:100794086 348.977