Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0202 ATGGATCGTGGGGACCAAATGGCGTTGTCTGGTTCTGCATCTTATTATATGCAGAGAGGAATGCCTGGTTCTGGAACACAGCAACCTGACTTGCACAATTCGCCTAGTATGCGTCCATTGTCGAATCCTAACCTCCCATTTCAACCAAGCATTGGAGGTAGTACCATTGGATCCACCATGCCATTGGAATCTTCGGGGATTTCGTCTCAATGTGTCAATGTTGGTGCCCCTGCTGGAGCTCCTTCCGGAGAACCGGTCAAAAGGAAGAGGGGTAGGCCTAGGAAGTATGGGCCGGATGGAACCGTTTCACTGGCATTGACTCCAGCGCCGGCTACTCATCCGGGAACCATGACACAACAAGGCCAGAAACGGGGTAGAGGCCGCCCCCCAGGGTCTGGGAAGAAACAGCAGCTGGCTTCTCTTGGTGAATTGATGTCTGGTACAGCTGGGATGGGTTTCACTCCTCATATCATCACCGTTGCGGTTGGAGAAGACATCGCAACCAAAGTTATGGCGTTTTCTCAGCAAGGGCCTAGAGCAATTTGTATTATGGCAGCCACTGGTGCTGTCTCTACCGTGACACTTCGACAACCTTCAACTTCCGGCGGCACTGTAACATATGAGGGCCGTTTTGAGATATTGTGCCTATCAGGCTCTTACTTACTTACCGATAGTGGTGGATCTCGCAATAGATCTGGGGGACTAAGTGTTTCCCTTGCTAGTCCTGATGGCCGTGTTATCGGTGGAGGAGTTGGCGGAGTACTTGTTGCAGCATCTACAGTTCAGGTTGTAGTTGGGAGCTTTATTTGGGGCGGATTGAAGGCGAAGAAACAGAAAAAAGAAGGTTCCTCCGAAGGAGCAGAAGTTGCTATGGAGCCGGATCATCAGACGGTTCATAACATTTCTCCGAATCAAACTCTTACTCCAACCTCGTCTCTAAGTCCGTGGCCTAGTTCGCGACCAATGGATATGCGCCATTCGCATATTGACATCGATTTAATGCGTGGGTGA 1011 0.5045 MDRGDQMALSGSASYYMQRGMPGSGTQQPDLHNSPSMRPLSNPNLPFQPSIGGSTIGSTMPLESSGISSQCVNVGAPAGAPSGEPVKRKRGRPRKYGPDGTVSLALTPAPATHPGTMTQQGQKRGRGRPPGSGKKQQLASLGELMSGTAGMGFTPHIITVAVGEDIATKVMAFSQQGPRAICIMAATGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLLTDSGGSRNRSGGLSVSLASPDGRVIGGGVGGVLVAASTVQVVVGSFIWGGLKAKKQKKEGSSEGAEVAMEPDHQTVHNISPNQTLTPTSSLSPWPSSRPMDMRHSHIDIDLMRG* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0202 336 SMART AT_hook_2 123 135 IPR017956 GO:0003677
Amo02g0202 336 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Amo02g0202 336 MobiDBLite consensus disorder prediction 11 72 - -
Amo02g0202 336 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 330 - -
Amo02g0202 336 MobiDBLite consensus disorder prediction 1 138 - -
Amo02g0202 336 MobiDBLite consensus disorder prediction 280 336 - -
Amo02g0202 336 MobiDBLite consensus disorder prediction 297 318 - -
Amo02g0202 336 Pfam Plants and Prokaryotes Conserved (PCC) domain 155 268 IPR005175 -
Amo02g0202 336 CDD DUF296 154 268 IPR005175 -
Amo02g0202 336 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 330 IPR039605 GO:0003680
Amo02g0202 336 ProSiteProfiles PPC domain profile profile. 149 289 IPR005175 -
Amo02g0202 336 Gene3D - 155 287 - -
Amo02g0202 336 SUPERFAMILY AF0104/ALDC/Ptd012-like 153 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0202 Amo-Chr2 2242215 2246752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0202 1 336 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 51.801 4.09e-91 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0202 - - gmx:100799791 494.197