Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0176 ATGGATCGTGGGGACCAAATGGCGTTGTCTGGTTCTGCATCTTATTATATGCAGAGAGGAATGCCTGGTTCTGGAACACAGCAACCTGACTTGCACAATTCGCCTAGTATGCGTCCATTGTCGAATCCTAACCTCCCATTTCAGCAAACCATTGGGGGTAGTACCATTGGATCCACCATGCCATTGGAATCTTCGGGGATTTCGTCTCAATGTGTCAATGTTGGTGCCCCTGCTGGAGCTCCTTCCGGAGAACCGGTCAAAAGGAAGAGGGGTAGGCCTAGGAAGTATGGGCCGGATGGAACCGTTTCACTGGCATTGACTCCAACGCCAGCTACTCATCCAGGAACCATGACACAACAAGGCCAGAAACGGGGTAGAGGTCGCCCCCCAGGGTCTGGGAAGAAACAGCAGCTGGCTTCTCTTGGTGAATTGATGTCTGGTACGGCTGGGATGGGTTTCACTCCTCATATCATCACCGTTGCTGTTGGAGAAGACATCGCAACCAAAGTTATGGCGTTTTCTCAGCAAGGGCCTAGAGCAATTTGTATTATGGCAGCCACTGGTGCTGTCTCTACCGTGACACTTCGACAACCTTCAACTTCCGGCGGCACTGTAACATATGAGGGCCGTTTTGAGATATTGTGCCTATCAGGCTCTTACTTACTTACCGATAGTGGTGGATCTCGCAATAGATCTGGGGGACTAAGTGTTTCCCTTGCTAGTCCCGATGGCCGTGTTATCGGCGGAGGAGTTGGCGGAGTACTTGTTGCAGCATCTACAGTTCAGGTTGTAGTTGGGAGCTTTATTTGGGGCGGATCGAAGGCGAAGAAACAGAAAAAAGAAGGTTCTTCCGAAGGAGCAGAAGTTGCTATGGAGCCGGATCATCAGACGGTTCATAACATTTCTCCGAATCAAAATCTTACTCCAACCTCGTCTCTAAGTCCGTGGCCTAGTTCGCGACCAATGGATATGCGCCATTCGCATATTGACATCGATTTAATGCGCGGGTGA 1011 0.5035 MDRGDQMALSGSASYYMQRGMPGSGTQQPDLHNSPSMRPLSNPNLPFQQTIGGSTIGSTMPLESSGISSQCVNVGAPAGAPSGEPVKRKRGRPRKYGPDGTVSLALTPTPATHPGTMTQQGQKRGRGRPPGSGKKQQLASLGELMSGTAGMGFTPHIITVAVGEDIATKVMAFSQQGPRAICIMAATGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLLTDSGGSRNRSGGLSVSLASPDGRVIGGGVGGVLVAASTVQVVVGSFIWGGSKAKKQKKEGSSEGAEVAMEPDHQTVHNISPNQNLTPTSSLSPWPSSRPMDMRHSHIDIDLMRG* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0176 336 MobiDBLite consensus disorder prediction 74 138 - -
Amo02g0176 336 MobiDBLite consensus disorder prediction 275 324 - -
Amo02g0176 336 SUPERFAMILY AF0104/ALDC/Ptd012-like 153 272 - -
Amo02g0176 336 MobiDBLite consensus disorder prediction 297 318 - -
Amo02g0176 336 MobiDBLite consensus disorder prediction 1 48 - -
Amo02g0176 336 CDD DUF296 154 268 IPR005175 -
Amo02g0176 336 Pfam Plants and Prokaryotes Conserved (PCC) domain 155 268 IPR005175 -
Amo02g0176 336 SMART AT_hook_2 123 135 IPR017956 GO:0003677
Amo02g0176 336 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Amo02g0176 336 MobiDBLite consensus disorder prediction 105 125 - -
Amo02g0176 336 ProSiteProfiles PPC domain profile profile. 149 289 IPR005175 -
Amo02g0176 336 MobiDBLite consensus disorder prediction 11 48 - -
Amo02g0176 336 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 330 - -
Amo02g0176 336 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 330 IPR039605 GO:0003680
Amo02g0176 336 Gene3D - 155 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0176 Amo-Chr2 2004741 2009450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0176 1 336 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 51.811 2.12e-92 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0176 - - gmx:100799791 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo04g2874 04 103895938 103900453 Amo02g0176 02 2004741 2009450 PCT
Amo02g0176 02 2004741 2009450 Amo04g2874 04 103895938 103900453 PCT