Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0142 ATGATTTTCAAGACACTAGAAGAAGCTGGAAAGTTCTACAAAAATTATTCCAAACTTGCCGGTTTTTCTACGAAAATAAGAAACACGACTCGGGACGGAGACAAGATTAAGAATCAACTAATTGTATGCACCAGAGAGGGGAGGTGGAAATCAAAGATATATCCAACTTTGAAGACAAACCCTTCAGCTGGGTTAAATTGTCCGACCAGAATTTACGTACACATAATGAAGGATGTTGGTCTTTGGACAATTTCCAAAGTTGTTTTGAATCACTCACATTCTTGTTGTCCAGACCAGGCTGAGATGCTCAAACAACACAAGGAGCTTAGCATGTTTGTGCGTCGCACCATCGAAACCTACGAGGAAGCCGGAATCAGATCGAGCAAAACTTACCAATCATTTGTGGCAGCAGCTGGCAGTCACCGTGAACTAGCATTTGGTTTGTTTTGCAAAGCTGTACGAGGATCAGTATATATGGATATCAGTTTACTTGGATCACCACTTCTGAGCCGGGATGAGAAGCACACAAAGGAGGTTTCCAACTCCACATTCAACAAGTTTATCGTCACCTACGACGCAGTATCACGAGATGTAAAGTGCCATTGCTTGCTGTTTGAGTCTAGGGGCATATTGTGCCGCCATTCCCTAAGCGTCCTAAGCTTTGAGCGAGTGGATAACGTGGCACCGAAATACATATTGGAACGTTGGAGTAAGAACATAAAGAAGAGGCATACACACATCAAGAGCAGCCAAGATGAACCTCTACTGGAGCCGAGAAGTAAGAGATTTGACAAATTGGTGTTTCGGTTACACAATATATGTAATTTTGCATCTGAGTCTGAATAG 846 0.4255 MIFKTLEEAGKFYKNYSKLAGFSTKIRNTTRDGDKIKNQLIVCTREGRWKSKIYPTLKTNPSAGLNCPTRIYVHIMKDVGLWTISKVVLNHSHSCCPDQAEMLKQHKELSMFVRRTIETYEEAGIRSSKTYQSFVAAAGSHRELAFGLFCKAVRGSVYMDISLLGSPLLSRDEKHTKEVSNSTFNKFIVTYDAVSRDVKCHCLLFESRGILCRHSLSVLSFERVDNVAPKYILERWSKNIKKRHTHIKSSQDEPLLEPRSKRFDKLVFRLHNICNFASESE* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0142 281 ProSiteProfiles Zinc finger SWIM-type profile. 187 223 IPR007527 GO:0008270
Amo02g0142 281 PANTHER OS03G0843700 PROTEIN 171 253 - -
Amo02g0142 281 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 171 253 IPR031052 GO:0006355
Amo02g0142 281 SMART 26again6 198 225 IPR006564 GO:0008270
Amo02g0142 281 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 116 IPR031052 GO:0006355
Amo02g0142 281 PANTHER OS03G0843700 PROTEIN 1 116 - -
Amo02g0142 281 Pfam FAR1 DNA-binding domain 11 96 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0142 Amo-Chr2 1760346 1762246 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo02g0142 FAR1 8.5e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0142 - - adu:107484182 384.415