Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0127 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCATCTTCACGGAACGCCGGTGTATTACTATTGTTCGCCAGCTTTGGAAGAGCGCGAGTCTCTAACCTCTAACGACGGTAATGGGACAGCTGCTTCACTCACCACCGGACTGCTCATCGGCTTGAACTTGGAATCATCCATACCAGATACTTACCAGTCGCCTCCTGCGCCTCTACCGTATGATACTGTCCTGAGAGGTCCTGCATCAACAGATTCCGAGTCAGGTAGAGAAACCATTAGTGGTAGTAGTTTCGAAATTTTAGTTACATGTGAAGATCTTGAAGAATCAGATTGTAAAGCTCAACCTAAATCGGCACCCTTGTCTCCAAGGAAGCCGGAACCTTTAAAATCAAATGAATCTCATGCATTGGTGACAGAAGAAGAGGATGTATGTCCAATTTGTCTAGAAGAATATGATGCTGAGAATCCCAAAACACTGACGAAATGCGACCACCACTTTCACCTGTCATGCATTCTCGAGTGGATGGAAAGAAGCGACTCGTGTCCCATATGTGATCAGGAGATGATCTTTGACCAGCCACTGGATTAG 582 0.4605 MGGCCCSARKPHLHGTPVYYYCSPALEERESLTSNDGNGTAASLTTGLLIGLNLESSIPDTYQSPPAPLPYDTVLRGPASTDSESGRETISGSSFEILVTCEDLEESDCKAQPKSAPLSPRKPEPLKSNESHALVTEEEDVCPICLEEYDAENPKTLTKCDHHFHLSCILEWMERSDSCPICDQEMIFDQPLD* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0127 193 Pfam Ring finger domain 141 182 IPR001841 -
Amo02g0127 193 SMART ring_2 142 182 IPR001841 -
Amo02g0127 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 189 IPR013083 -
Amo02g0127 193 SUPERFAMILY RING/U-box 133 189 - -
Amo02g0127 193 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 192 - -
Amo02g0127 193 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Amo02g0127 193 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 192 - -
Amo02g0127 193 MobiDBLite consensus disorder prediction 108 133 - -
Amo02g0127 193 MobiDBLite consensus disorder prediction 61 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0127 Amo-Chr2 1426816 1429595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0127 1 193 C3H Transcription Factor Family AT4G00335 58.549 3.50e-75 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0127 - - adu:107472508 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo04g2800 04 102158390 102162432 Amo02g0127 02 1426816 1429595 PCT
Amo02g0127 02 1426816 1429595 Amo04g2800 04 102158390 102162432 PCT