Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0096 ATGGCTTTGGAGGAGGACTACTTCTACAACATACTTAGTCCAACAAATATTAGAAGTTTGAATTTGTCTTCATGGATTCCAGTAGATTCACCATGCTTGTTGGAGCATATAATTCTACCTGTGGAATTTGGATTCTTTCTGATATTGTTATTCCAACTTGTGAGGAAAAATTTGAACTTCATCAACAAGCAGAACAAAATCCCCTCAGATATGATTCATCAAACTATAACAACAAACCATGGTTTAGCTTACAAAATCAGCATAGTTCTCACCACTTTGATGGTAGCTCTTCATGCAGCAACTCTATCACTTATCATTTTCAATCATGAGACTCAATGCACTTCAAAATTCAAGGCTATTGCATCAGAAACAATTCAAGTTCTATCATGGGGTGTGAGTCTAATTGCAATTTTCAAGGTATCAAGAACAAGTTCTTATTTTCCTTGGATTCTCAGAGCTTGGTGGATTTGTAGTTTCATTTTGTGCATTGTTGGAACATCACTTCATACAATATTGAGTGTTAGCCAAAAGGGTCAAATTGGTTTAAGAGAATATGCAGATTTCATTGGTTTGGTTACTTCAACATTCTTATTGATTGTTTCAATTAGAGGGAAGAGTGACATTGTGTTAGTTCAAAAAAGTGAGGTAACTGAACCACTTCTGAGTTCAAAACCTGGTAAAACTTCAGAATTTCCAAAGGAATCTCCATATGGAAAGGCTACTTTGATGCAACTCATCAACTTCTCTTGGCTCAATCCATTGTTTGAAGAAGGTTACAAGAAGCCTCTTGAGCAAAGTGACATTCCTAATGTTGATATCAAGGACTCGGCCGAGTTTCTAACCTCGGCCTTCGACGAGAGCCTTAGGCAGGTAAAGGAGAAAGATGGAACTACAAACCCCTCTATTTACAAGGCAATCTATCACTTCACCAGGAAGAAAGCAGCAATCAATGCGCTTTTCGCCATAATATGCGCTTCGGCTTCATATGTTGGTCCATACTTGATCACTGACTTTGTTGATTTCTTGGGGGACAAGGAAAAGCAGGGGTTGAAAACAGGGTATCTTCTTTCACTAGCATTCTTGTGTGCTAAGATGGTTGAGACAATAACTCAGAGGCAATGGATTTTCGGCGCAAGGCAATTAGGCCTTCGCCTTAGATCTGCATTGATATCTCATATATATAAGAAGGGTCTGCATCTTTCGAATAGATCGCGACAAAGTCACACAGGCGGCGAGATAATGAACTATATGAGTGTTGATGTGCAGAGAATCACAGATTTCATTTGGTATGTTAATGTGATTTGGATGCTTCCTATACAAATTTCTTTAGCAGTGTTCATTTTGCATACAAATCTTGGATTAGGCTCTATGGCCGCGCTAGCCGCGACTCTAGCAGTGATGACTCTGAACATACCTCTTACCAAAATACAGAAAAGATACCAAGCAATGAAAGCAACTTCAGAAGTTCTGAGAAACATGAAAACTTTGAAGCTTCAAGCATGGGATAGTGAATTTCTTCAAAGGCTAGAATCATTGAGGAAAGTGGAGTATAATTGGTTACTGAAATCATTACAACAAGCAGCACTTTCTGCTTTTATCTTCTGGGGATCACCTACATTCATATCTGTGATAACCTTTTGGGCTTGTATGCTAATGGGAATCGAGCTAACGGCCAGAAGAGTCTTATCCGCATTCGCCACATTTAGAATGTTACAGGATCCTATTTTCAGCCTACCTGATTTACTCAATGTCATGGCTCAAGGGAAAGTTTCGGTTGATAGGATCGCTTCGTACCTTAGGGAGGAAGAAATCCAGCATGATGTCATTGAAAATGTATCAAGGGACAAAACAGAATTTGATGTAGTCATTGATAAAGGGAGATTCAGCTGGGATCCAGAGTCTAGAACTCCATCTATTGATCAAATAGAGTTGAAAGTTAAAAGAGGAATGAAGGTGGCGATTTGTGGATCGGTTGGTTCTGGAAAATCAAGCCTGCTGTCTGGTATTTTGGGAGAGATATATAAGCAATCCGGGAAAGTGAAGATCAGTGGAACCAAAGCTTATGTTCCACAGTCTCCATGGATTCTTACAGGGAATATTAGAGACAATATCACATTTGGAAAAGAGTATGATCCTGAAAAGTATGAGAAAACTGTCCAAGCTTGTGCATTGAAGAAGGACTTTGAGCTATTCTCTTGTGGTGATCTCACTGAGATTGGAGAAAGAGGGATCAACATGAGTGGTGGACAAAAGCAGAGGATTCAGATAGCGCGAGCCGTATACCAAGATGCTGATATATATCTTCTTGATGACCCTTTTAGCGCCGTCGATGCACATACCGGAACACACCTATTTAAGGAGTGTCTTATGGGGATTCTTAAAGAGAAAACCATACTTTTTGTTACACACCAAGTTGAATTTCTTCCAGCAGCAGATCTCATCCTGGTGATGCAAAATGGAAAAATTACACAAGCTGGAAAATTTGAAGAGCTTCTAAAGCAAAACATAGGATTTGAAGTCTTAGTTGGTGCTCATAGTAAAGCTCTCGAGTCAATTCTCACTGTCGAAAACTCAAGCAGAACAGCTCAAAATCCCATAGCTGAAGCAGAATCCAACTCAAATGTGAAACTCATGCACAAAGAACAGCATGACACAGTGGAAGATAATCCACCAGAGAGGAAAGGAAATGAAGGAAAATTGGTTCAAGATGAAGAAAGAGAAACAGGAAGCATATCAAAAGAAGTGTACTGGACTTATTTGACAACTGCGAAAGGAGGAGCATTGGTTCCGGTTATAATCTTAGCACAATCTTCATTCCAAATACTTCAGATTGCAAGTAACTATTGGATGGCTTGGGTTTGTCCTACAAGTAGTGATGCTAAGCCTATATTTGACATGAATTTCATACTTCTTATTTACATGGTTCTTTCTGTTTCTGGCGCGCTATGTGTTCTGGTGCGAGCCTTGTTGGTCGCATACACCGGCCTTTGGACAGCACAGACATTTTTCACAAGCATGCTGCATAGTGTGCTTAGAGCTCCAATGTCATTCTTTGATTCAACACCAACTGGAAGAATCTTGAACAGGGTCTCTACAGATCAAAGTATTCTAGATTTGGAGATGGCAACCAAATTAGGATGGTGTGCTTTCTCTGTAATACAAATTCTGGGAACTATTGCAGTGATGTCTCAGGTGGCATGGCAAGTTTTCGCCATTTTCATTCCGGTAACTGCAGTCTGCATATGGTATCAAAGATATTACACACCAACAGCAAGAGAACTGGCTCGCTTAGCACAGATACAAATTGCACCAATCCTCCACCATTTTGCAGAATCTTTAGCCGGAGCAGCGTCGATACGAGCTTTCGATCAAGAAGGCAGATTCATACATACAAATCTTGATCTTGTGGATGGCCATGCAAGGCCATGGTTTCATAATGTGTCTGCAATGGAATGGCTTTCTTTCAGATTGAACATACTTTCAAATTTTGTTTTTGCCTTCTCACTTGTTATGCTTGTGAGCCTCCCTGAAGGAATAATCAATCCAAGCATTGCAGGGTTGGCAGTAACATATGGGATCAATTTGAATGTGTTGCAAGCTCAAGTTATATGGAACATATGCAATGCTGAAAACAAGATGATCTCAGTTGAAAGAATTCTGCAATACAGAAATATAGCAAGTGAGGCACCACTTGTCATTCAGGACAGCAGGCCGCCGAGCAACTGGCCGGCGACCGGAACAATATGTTTCACAAATTTAGAGATACGCTATGCTGAACAACTCCCATCAGTTCTGAAACACATCACATGCACATTCCCGGGACAGAAGAAAATTGGCGTTGTAGGACGAACCGGAAGTGGAAAATCGACCCTTATTCAGGCGATTTTTAGGATTGTTGAGCCAAGAGAAGGAAGCATTGTGATTGACAATGTGGACATATGCAAGATAGGTCTGCATGACTTAAGGTCAAGGCTCAGCATCATCCCACAAGACCCTTCCATGTTTGAAGGCACTGTTAGGGGCAACTTGGACCCCTTGGAACTATACTCTGACACTCAAATCTGGGAGGCACTAGATAAATGTCAACTTGGTCAGCTAGTGAGGGAAAAGCAAGACAAGTTGGATAGCCCAGTGGTAGAAAATGGTGAGAATTGGAGTGTGGGACAAAGGCAACTATTTTGCCTAGGAAGAGCATTGCTGAAGAGAAGCAGCATATTAGTTCTTGATGAAGCAACTGCCTCTGTGGACTCTGCAACTGATGGGGTGATACAGCAGATCATCAGTCACGAGTTTAAAGATCGGACCGTCGTCACAATTGCTCATCGTATCCACACGGTTATAGACAGTGATCTTGTTTTGGTGCTCAGTGATGGGAGAATCGCCGAGTATGATGAGCCGTCGAAGTTACTTGAAAGAGAAGATTCCTTCTTCTATAAACTCATAAAGGAGTATTCAAGCAGATCAAGTGGCTTCAACAGCTTAGCAACTCAACATGTTCAAAGCTAG 4506 0.4086 MALEEDYFYNILSPTNIRSLNLSSWIPVDSPCLLEHIILPVEFGFFLILLFQLVRKNLNFINKQNKIPSDMIHQTITTNHGLAYKISIVLTTLMVALHAATLSLIIFNHETQCTSKFKAIASETIQVLSWGVSLIAIFKVSRTSSYFPWILRAWWICSFILCIVGTSLHTILSVSQKGQIGLREYADFIGLVTSTFLLIVSIRGKSDIVLVQKSEVTEPLLSSKPGKTSEFPKESPYGKATLMQLINFSWLNPLFEEGYKKPLEQSDIPNVDIKDSAEFLTSAFDESLRQVKEKDGTTNPSIYKAIYHFTRKKAAINALFAIICASASYVGPYLITDFVDFLGDKEKQGLKTGYLLSLAFLCAKMVETITQRQWIFGARQLGLRLRSALISHIYKKGLHLSNRSRQSHTGGEIMNYMSVDVQRITDFIWYVNVIWMLPIQISLAVFILHTNLGLGSMAALAATLAVMTLNIPLTKIQKRYQAMKATSEVLRNMKTLKLQAWDSEFLQRLESLRKVEYNWLLKSLQQAALSAFIFWGSPTFISVITFWACMLMGIELTARRVLSAFATFRMLQDPIFSLPDLLNVMAQGKVSVDRIASYLREEEIQHDVIENVSRDKTEFDVVIDKGRFSWDPESRTPSIDQIELKVKRGMKVAICGSVGSGKSSLLSGILGEIYKQSGKVKISGTKAYVPQSPWILTGNIRDNITFGKEYDPEKYEKTVQACALKKDFELFSCGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTHLFKECLMGILKEKTILFVTHQVEFLPAADLILVMQNGKITQAGKFEELLKQNIGFEVLVGAHSKALESILTVENSSRTAQNPIAEAESNSNVKLMHKEQHDTVEDNPPERKGNEGKLVQDEERETGSISKEVYWTYLTTAKGGALVPVIILAQSSFQILQIASNYWMAWVCPTSSDAKPIFDMNFILLIYMVLSVSGALCVLVRALLVAYTGLWTAQTFFTSMLHSVLRAPMSFFDSTPTGRILNRVSTDQSILDLEMATKLGWCAFSVIQILGTIAVMSQVAWQVFAIFIPVTAVCIWYQRYYTPTARELARLAQIQIAPILHHFAESLAGAASIRAFDQEGRFIHTNLDLVDGHARPWFHNVSAMEWLSFRLNILSNFVFAFSLVMLVSLPEGIINPSIAGLAVTYGINLNVLQAQVIWNICNAENKMISVERILQYRNIASEAPLVIQDSRPPSNWPATGTICFTNLEIRYAEQLPSVLKHITCTFPGQKKIGVVGRTGSGKSTLIQAIFRIVEPREGSIVIDNVDICKIGLHDLRSRLSIIPQDPSMFEGTVRGNLDPLELYSDTQIWEALDKCQLGQLVREKQDKLDSPVVENGENWSVGQRQLFCLGRALLKRSSILVLDEATASVDSATDGVIQQIISHEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDEPSKLLEREDSFFYKLIKEYSSRSSGFNSLATQHVQS* 1502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0096 1501 CDD ABC_6TM_ABCC_D1 316 595 IPR044746 GO:0140359
Amo02g0096 1501 Pfam ABC transporter 1265 1413 IPR003439 GO:0005524
Amo02g0096 1501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1238 1480 IPR027417 -
Amo02g0096 1501 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 315 587 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo02g0096 1501 PANTHER - 120 1491 - -
Amo02g0096 1501 Pfam ABC transporter transmembrane region 940 1175 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo02g0096 1501 Pfam ABC transporter transmembrane region 316 560 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo02g0096 1501 Gene3D - 1231 1484 IPR027417 -
Amo02g0096 1501 SUPERFAMILY ABC transporter transmembrane region 311 603 IPR036640 GO:0005524|GO:0016021
Amo02g0096 1501 SUPERFAMILY ABC transporter transmembrane region 931 1224 IPR036640 GO:0005524|GO:0016021
Amo02g0096 1501 Gene3D ABC transporter type 1, transmembrane domain 287 607 IPR036640 GO:0005524|GO:0016021
Amo02g0096 1501 CDD ABCC_MRP_domain2 1246 1466 - -
Amo02g0096 1501 MobiDBLite consensus disorder prediction 881 906 - -
Amo02g0096 1501 CDD ABC_6TM_ABCC_D2 929 1222 IPR044726 GO:0140359
Amo02g0096 1501 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 621 844 IPR003439 GO:0005524
Amo02g0096 1501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 837 IPR027417 -
Amo02g0096 1501 CDD ABCC_MRP_domain1 621 821 - -
Amo02g0096 1501 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1248 1482 IPR003439 GO:0005524
Amo02g0096 1501 Gene3D - 617 847 IPR027417 -
Amo02g0096 1501 Pfam ABC transporter 640 773 IPR003439 GO:0005524
Amo02g0096 1501 ProSitePatterns ABC transporters family signature. 746 760 IPR017871 GO:0005524
Amo02g0096 1501 Gene3D ABC transporter type 1, transmembrane domain 892 1229 IPR036640 GO:0005524|GO:0016021
Amo02g0096 1501 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 120 1491 - -
Amo02g0096 1501 SMART AAA_5 1274 1466 IPR003593 -
Amo02g0096 1501 SMART AAA_5 648 821 IPR003593 -
Amo02g0096 1501 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 931 1211 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0096 Amo-Chr2 1098215 1110161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0096 609 874 Calmodulin-binding Proteins AT2G36910 28.571 6.41e-23 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0096 - - gmx:100809749 2442.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0791 19 12438864 12473088 Amo02g0096 02 1098215 1110161 hybridization
Amo02g0096 02 1098215 1110161 Amo16g3137 16 134668403 134670201 PCT