Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0077 ATGTTTAATATACTGAGAAAAAACACTTCACTATTAACACATACACTTAAAACGTTTTTCATCATTCTTCATCGCGCCTCCAACCTTAACCCCAGAACTTCATCGCGCTTCCAACCCCTGCTTCGGTGCTCCTTACATCGTCGCTCCCTTCGTCTCAAAGCCTCCGTCATCTTGAACATTAGTTGGTTTCAGAAACGACTCAATGAAAACAACGAGGTATTCTCATTATCAATGGGTGAAATGGGAACTGTGATTCTTGGTGCAAGGGAGTCTTGCAAATTCTTCCATGATCGTATAAAAGGCAAAAGGTCCAACACCAAGCTAAAAAAGATTTTTTCAGAGAACTTGTGTGAAATTTAA 360 0.4 MFNILRKNTSLLTHTLKTFFIILHRASNLNPRTSSRFQPLLRCSLHRRSLRLKASVILNISWFQKRLNENNEVFSLSMGEMGTVILGARESCKFFHDRIKGKRSNTKLKKIFSENLCEI* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0077 119 Gene3D Transcriptional Coactivator Pc4; Chain A 59 116 IPR009044 GO:0003677|GO:0006355
Amo02g0077 119 Pfam Whirly transcription factor 69 113 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0077 Amo-Chr2 933019 936463 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0077 72 111 Whirly Transcription Factor Family AT1G14410 56.098 7.99e-10 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Amo02g0077 Whirly 4.3e-08 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0077 - K12948 adu:107478549 54.6842